RchiOBHm_Chr1g0343451

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
35567779 .. 35567985
207 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGACAACTGCGTTGATTGGATCAGCTTCAGTCATATCCTATTTAGGTTATGTGACTTATATTGACTTCATGAACAATATGGGGCACTGCAATTTCGAGCTCGATCAGTCCAGATTGGATTTTCTGTCTTTCCCCCCCTCTCAAGTATCTCATGTATTCCCTGACGTAATTGCATGCCATGTTATTTCAGTACATTTTGGCATGTAA

Protein Analysis

68

Amino Acids

7.57

Weight (kDa)

5.13

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 1 cut(s) 192
AluBI AGCT 2 cut(s) 26, 100
AluI AGCT 2 cut(s) 26, 100
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 87, 102
Bsp143I GATC 2 cut(s) 20, 103
BspHI TCATGA 1 cut(s) 69
BspPI GGATC 1 cut(s) 28
BssMI GATC 2 cut(s) 20, 103
BstC8I GCNNGC 1 cut(s) 175
BstKTI GATC 2 cut(s) 23, 106
BstMBI GATC 2 cut(s) 20, 103
BstNSI RCATGY 2 cut(s) 177, 205
BstSLI GKGCMC 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 175
CciI TCATGA 1 cut(s) 69
Csp6I GTAC 1 cut(s) 191
CviAII CATG 5 cut(s) 70, 152, 174, 179, 202
CviJI RGCY 2 cut(s) 26, 100
CviKI_1 RGCY 2 cut(s) 26, 100
CviQI GTAC 1 cut(s) 191
DpnI GATC 2 cut(s) 22, 105
DpnII GATC 2 cut(s) 20, 103
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 5 cut(s) 73, 155, 177, 182, 205
FaiI YATR 9 cut(s) 35, 51, 60, 71, 80, 153, 175, 180, 203
FatI CATG 5 cut(s) 69, 151, 173, 178, 201
FriOI GRGCYC 1 cut(s) 102
Hin1II CATG 5 cut(s) 73, 155, 177, 182, 205
Hpy188III TCNNGA 2 cut(s) 70, 111
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 90, 173
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 5 cut(s) 73, 155, 177, 182, 205
Kzo9I GATC 2 cut(s) 20, 103
LpnPI CCDG 2 cut(s) 124, 174
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 22, 105
MboI GATC 2 cut(s) 20, 103
MhlI GDGCHC 2 cut(s) 87, 102
MluCI AATT 2 cut(s) 91, 168
MnlI CCTC 1 cut(s) 148
NdeII GATC 2 cut(s) 20, 103
NlaIII CATG 5 cut(s) 73, 155, 177, 182, 205
NmuCI GTSAC 1 cut(s) 52
NspI RCATGY 2 cut(s) 177, 205
PaeI GCATGC 1 cut(s) 177
PagI TCATGA 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 102
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SacI GAGCTC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 20, 103
SduI GDGCHC 2 cut(s) 87, 102
SetI ASST 4 cut(s) 28, 49, 102, 168
SgeI CNNG 9 cut(s) 82, 109, 113, 123, 155, 164, 173, 186, 191
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
SphI GCATGC 1 cut(s) 177
Sse9I AATT 2 cut(s) 91, 168
SstI GAGCTC 1 cut(s) 102
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 96, 102
TasI AATT 2 cut(s) 91, 168
TatI WGTACW 1 cut(s) 190
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 58, 86
TspRI CASTG 1 cut(s) 92
XceI RCATGY 2 cut(s) 177, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.