RchiOBHm_Chr1g0345111

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
37494264 .. 37496235
1972 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGCCCTACACAGAATTTGGTGTAATGATGGTTGTTCCAGTCAAAGACATCAGAAGCAAAAATGCATGGGTTTTCTTAAGGCCTTTGACATGGGATATTTGGCTAACATCTTGTATTTTATTCGTCCTTATTAGATTCGTGGTTTGGGTACTTGAACATCAAGTTAATGAAGAGTCTCGCGGCCCTCCCTCTTATCAAGTTGGCACAAGCGTGTGGTTTTCTTTTTCAATTATGGTCTTTTCACATGGTAATTGTCCGAATGCTCCTTAA

Protein Analysis

89

Amino Acids

10.34

Weight (kDa)

6.7

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lig_chan PF00060 30 - 84 7e-10 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 180
AciI CCGC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 1 cut(s) 150
AflII CTTAAG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 155, 228
AleI CACNNNNGTG 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 180
AoxI GGCC 2 cut(s) 80, 181
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 182
BccI CCATC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 76
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 82, 183
BsmAI GTCTC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 2 cut(s) 82, 183
BspACI CCGC 1 cut(s) 180
BspANI GGCC 2 cut(s) 82, 183
BspFNI CGCG 1 cut(s) 180
BspTI CTTAAG 1 cut(s) 76
BsrI ACTGG 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 180
BstUI CGCG 1 cut(s) 180
BsuRI GGCC 2 cut(s) 82, 183
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 149
CviAII CATG 3 cut(s) 66, 90, 245
CviJI RGCY 3 cut(s) 82, 103, 183
CviKI_1 RGCY 3 cut(s) 82, 103, 183
CviQI GTAC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 67
FaeI CATG 3 cut(s) 69, 93, 248
FaiI YATR 4 cut(s) 67, 91, 233, 246
FatI CATG 3 cut(s) 65, 89, 244
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 2 cut(s) 82, 183
Hin1II CATG 3 cut(s) 69, 93, 248
HinfI GANTC 2 cut(s) 135, 173
Hpy188I TCNGA 2 cut(s) 53, 258
HpyCH4V TGCA 1 cut(s) 65
Hsp92II CATG 3 cut(s) 69, 93, 248
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 1 cut(s) 51
MboII GAAGA 1 cut(s) 182
MluCI AATT 3 cut(s) 14, 228, 250
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 2 cut(s) 195, 199
Mph1103I ATGCAT 1 cut(s) 67
MseI TTAA 3 cut(s) 77, 165, 268
MslI CAYNNNNRTG 1 cut(s) 209
MspCI CTTAAG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 265
MvnI CGCG 1 cut(s) 180
NlaIII CATG 3 cut(s) 69, 93, 248
NsiI ATGCAT 1 cut(s) 67
OliI CACNNNNGTG 1 cut(s) 209
PceI AGGCCT 1 cut(s) 82
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 182
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 182
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 3 cut(s) 77, 165, 268
SatI GCNGC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 3 cut(s) 14, 228, 250
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 1 cut(s) 180
StuI AGGCCT 1 cut(s) 82
TasI AATT 3 cut(s) 14, 228, 250
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 3 cut(s) 77, 165, 268
Tru9I TTAA 3 cut(s) 77, 165, 268
TspDTI ATGAA 1 cut(s) 183
Vha464I CTTAAG 1 cut(s) 76
XapI RAATTY 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.