Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

37595648 .. 37595887

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGCCTCCCCATCGACAAACACATCATCCCTGAAAGACCCCTTCACGTCAACGACGAGCTCATCTGGGACAATGGCATACCTTTTCCCGAACCTTGTATCGATCGCATCGTCGACACAGTCGGAAAGTGCGAAGCTTTGGCTCGGCTGACTGGAGGTTTGAGCAGCTTCTTTGGGCTAGGATTATTAGCCGTGTGGAATGACAAGGCATCCAAAATTCGGTTTGCCCCAAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.72

Weight (kDa)

6.04

Isoelectric Point (pI)

22.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	219
AjiI	CACGTC	1 cut(s)	49
AluBI	AGCT	3 cut(s)	61, 137, 168
AluI	AGCT	3 cut(s)	61, 137, 168
Alw21I	GWGCWC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	216
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AspS9I	GGNCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	179
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	2 cut(s)	117, 218
BpmI	CTGGAG	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	157
BseCI	ATCGAT	1 cut(s)	102
BseGI	GGATG	2 cut(s)	27, 209
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	6
BshVI	ATCGAT	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	6
BspDI	ATCGAT	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	27, 209
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMCI	CGRYCG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	177
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	27, 209
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	102
CviJI	RGCY	8 cut(s)	6, 61, 137, 143, 148, 168, 178, 191
CviKI_1	RGCY	8 cut(s)	6, 61, 137, 143, 148, 168, 178, 191
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	63
FaiI	YATR	1 cut(s)	80
FaqI	GGGAC	1 cut(s)	83
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	2 cut(s)	14, 196
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	6
HincII	GTYRAC	2 cut(s)	52, 115
HindII	GTYRAC	2 cut(s)	52, 115
HindIII	AAGCTT	1 cut(s)	135
Hpy166II	GTNNAC	2 cut(s)	52, 115
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	2 cut(s)	52, 115
Hpy99I	CGWCG	2 cut(s)	59, 116
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	3 cut(s)	45, 52, 138
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	2 cut(s)	117, 218
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	48
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	2 cut(s)	17, 149
NdeII	GATC	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 108, 129
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	167
Ple19I	CGATCG	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	119
PvuI	CGATCG	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	63
SalI	GTCGAC	1 cut(s)	113
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	7 cut(s)	51, 63, 85, 97, 139, 160, 170
SfaNI	GCATC	2 cut(s)	117, 218
Sse9I	AATT	1 cut(s)	216
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	3 cut(s)	15, 102, 114
TasI	AATT	1 cut(s)	216
TseI	GCWGC	1 cut(s)	165
Tth111I	GACNNNGTC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.