Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

37819520 .. 37820400

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCATGCTGGGCTTCATGGGGTCTGAAGAATCTGCGTACTAAATCGGATGCTCAAACATCAAGGCCATCATATTGGACATGCTCGCTGCCTCAATGGACACATCGGCAACAACAACTAGGAGAAGTTGGAGTACTTGGACATGGGGGAGTGAAGGAAACCTTGAGGCTACATCCGGTAGCACCATTATTGCTTCCCTATCAATCAACTGAAGATTACACTGTTAATCGCTTCCACATATCCAAAAAGTCGCGCATTATGATAAATGTATGGTCAATTGGGAGAGACCCAAATGCTTGGACTGAAGCAGAGAAGTTCATACCTGAGAAGTTCGTGGATAGTAGTATAGATCTTCGGGAAAACCACTTTGAGCTTCTTCCCTTTGGCTCTGGACAAAGGCGTTGCCCTGGAATTCAACTAGGCCTAACGGTTGTCCAGTTAGTGGTGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

150

Amino Acids

17.07

Weight (kDa)

9.15

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	51 - 149	1.1e-28	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	442
AccII	CGCG	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	3 cut(s)	47, 231, 324
AfaI	GTAC	2 cut(s)	40, 135
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	65, 421
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	255
BarI	GAAGNNNNNNTAC	2 cut(s)	117, 149
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	2 cut(s)	119, 419
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
BmcAI	AGTACT	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	55, 172
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	75
BseYI	CCCAGC	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	67, 423
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	67, 423
Bso31I	GGTCTC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	349
BspANI	GGCC	2 cut(s)	67, 423
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	223, 430
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	55, 172
BstFNI	CGCG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	406
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	2 cut(s)	75, 297
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	67, 423
BtsCI	GGATG	2 cut(s)	55, 172
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	86
CfoI	GCGC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	39, 134
CviAII	CATG	4 cut(s)	6, 18, 81, 143
CviJI	RGCY	6 cut(s)	14, 67, 169, 373, 387, 423
CviKI_1	RGCY	6 cut(s)	14, 67, 169, 373, 387, 423
CviQI	GTAC	2 cut(s)	39, 134
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	279
Eco57I	CTGAAG	3 cut(s)	47, 231, 324
EcoRI	GAATTC	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	406
FaeI	CATG	4 cut(s)	9, 21, 84, 146
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	4 cut(s)	5, 17, 80, 142
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	2 cut(s)	62, 159
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	2 cut(s)	119, 419
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	89
GsaI	CCCAGC	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	67, 423
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	9, 21, 84, 146
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	27, 49
Hpy188III	TCNNGA	2 cut(s)	356, 390
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	223, 430
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	4 cut(s)	9, 21, 84, 146
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	349
LpnPI	CCDG	6 cut(s)	189, 336, 375, 393, 420, 449
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	119, 419
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	40, 224, 344, 368
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	2 cut(s)	276, 411
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	2 cut(s)	102, 159
MseI	TTAA	1 cut(s)	225
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	253
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	4 cut(s)	9, 21, 84, 146
NspI	RCATGY	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	2 cut(s)	40, 135
RsaNI	GTAC	2 cut(s)	39, 134
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	349
ScaI	AGTACT	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	408
SetI	ASST	3 cut(s)	164, 325, 375
SfaNI	GCATC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	276, 411
SseBI	AGGCCT	1 cut(s)	423
SspMI	CTAG	2 cut(s)	119, 419
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	223, 430
TasI	AATT	2 cut(s)	276, 411
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	6, 307
TspRI	CASTG	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	442
XapI	RAATTY	1 cut(s)	411
XceI	RCATGY	1 cut(s)	84
XspI	CTAG	2 cut(s)	119, 419
ZrmI	AGTACT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.