RchiOBHm_Chr1g0347721

COP9 signalosome complex subunit 7-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
40411762 .. 40412679
918 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGAGCTGCCACATAAGTCACTGTAATGCTGGTCGTCTTCCACAATTGGTTCCTGATCAAGCACTAAAGCTAAGGCAGTTAACTGTGCTTACACTGGCTCCTGTACTTCCGTACTTAATCTTATATATGCTTAAAAATGTCATTATTGAAAGTAAATGTAAAGGAAACCAAAAATTGAAAGACAATTTAACCTACTTTAGGCAAGTTCCATTCTTAGCTGTACTTGGAGCAAACTTATATAGTTATCAACTTATCATTAGCACTACTGTTTGA

Protein Analysis

90

Amino Acids

10.16

Weight (kDa)

9.51

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 105, 113, 222
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 2 cut(s) 149, 178
AluBI AGCT 3 cut(s) 6, 70, 218
AluI AGCT 3 cut(s) 6, 70, 218
ApeKI GCWGC 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 29
BclI TGATCA 1 cut(s) 55
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 51, 99
BpiI GAAGAC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 198
Bsp143I GATC 1 cut(s) 55
BspLI GGNNCC 2 cut(s) 51, 99
BsrI ACTGG 1 cut(s) 99
BssMI GATC 1 cut(s) 55
Bst4CI ACNGT 3 cut(s) 23, 85, 268
BstDEI CTNAG 2 cut(s) 71, 214
BstENI CCTNNNNNAGG 1 cut(s) 196
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 19, 92
Csp6I GTAC 3 cut(s) 104, 112, 221
CviJI RGCY 4 cut(s) 6, 70, 98, 218
CviKI_1 RGCY 4 cut(s) 6, 70, 98, 218
CviQI GTAC 3 cut(s) 104, 112, 221
DdeI CTNAG 2 cut(s) 71, 214
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 196
FaiI YATR 6 cut(s) 14, 124, 126, 128, 238, 240
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 7
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HpaI GTTAAC 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 81
HpyCH4III ACNGT 3 cut(s) 23, 85, 268
HpyF3I CTNAG 2 cut(s) 71, 214
Ksp22I TGATCA 1 cut(s) 55
KspAI GTTAAC 1 cut(s) 81
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 103, 227
LpnPI CCDG 4 cut(s) 15, 66, 80, 114
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 29
MfeI CAATTG 1 cut(s) 44
MluCI AATT 3 cut(s) 44, 173, 184
MseI TTAA 4 cut(s) 80, 116, 132, 188
MslI CAYNNNNRTG 1 cut(s) 24
MunI CAATTG 1 cut(s) 44
NdeII GATC 1 cut(s) 55
NlaIV GGNNCC 2 cut(s) 51, 99
NmuCI GTSAC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 51, 99
RsaI GTAC 3 cut(s) 105, 113, 222
RsaNI GTAC 3 cut(s) 104, 112, 221
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 4 cut(s) 80, 116, 132, 188
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 1 cut(s) 55
SetI ASST 4 cut(s) 8, 72, 194, 220
SgeI CNNG 7 cut(s) 42, 65, 71, 107, 113, 215, 236
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 3 cut(s) 44, 173, 184
TaaI ACNGT 3 cut(s) 23, 85, 268
TasI AATT 3 cut(s) 44, 173, 184
TatI WGTACW 2 cut(s) 103, 220
Tru1I TTAA 4 cut(s) 80, 116, 132, 188
Tru9I TTAA 4 cut(s) 80, 116, 132, 188
TscAI CASTG 2 cut(s) 26, 99
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 2 cut(s) 26, 99
XagI CCTNNNNNAGG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.