RchiOBHm_Chr1g0348351

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
41158034 .. 41158279
246 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGTACCCAACCTATCATTGCTCACCACCGGTGTCCAAACATACCAAGGCCTATCTTATTCTGGACAGCTTTGAGAACGGTATTGATGGTGGAGTATCCACATGTGACAATCGATATCATTCCGACGAGACACTAGTTGTGGCGTTATCCACCGGGTGGTTTAACAATGGAGGAATGTGTCTAAAGAACATCACGAATAGCGGTATAATGGGCGCAGTGTGGTGGCCTTGGTGGTGGATAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.14

Weight (kDa)

5.76

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 65 5.5e-17 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 156
AciI CCGC 1 cut(s) 201
AdeI CACNNNGTG 1 cut(s) 156
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 101
AgeI ACCGGT 1 cut(s) 28
AhlI ACTAGT 1 cut(s) 133
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 122
AoxI GGCC 2 cut(s) 48, 224
AsiGI ACCGGT 1 cut(s) 28
AspLEI GCGC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 15
BccI CCATC 1 cut(s) 80
BciVI GTATCC 1 cut(s) 106
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 122
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 1 cut(s) 134
BfuI GTATCC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BpuMI CCSGG 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 45, 227
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse118I RCCGGY 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 45, 227
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 16
BshFI GGCC 2 cut(s) 50, 226
BshTI ACCGGT 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 112
BsiSI CCGG 2 cut(s) 29, 153
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 2 cut(s) 50, 226
BspACI CCGC 1 cut(s) 201
BspANI GGCC 2 cut(s) 50, 226
BspDI ATCGAT 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 45, 227
BssT1I CCWWGG 2 cut(s) 45, 227
Bst4CI ACNGT 1 cut(s) 80
BstHHI GCGC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 152
Bsu15I ATCGAT 1 cut(s) 112
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 50, 226
BsuTUI ATCGAT 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 28
ClaI ATCGAT 1 cut(s) 112
Csp6I GTAC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 28
CviAII CATG 1 cut(s) 102
CviJI RGCY 3 cut(s) 50, 69, 226
CviKI_1 RGCY 3 cut(s) 50, 69, 226
CviQI GTAC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 45, 227
Eco147I AGGCCT 1 cut(s) 50
Eco32I GATATC 1 cut(s) 116
EcoRV GATATC 1 cut(s) 116
EcoT14I CCWWGG 2 cut(s) 45, 227
ErhI CCWWGG 2 cut(s) 45, 227
FaeI CATG 1 cut(s) 105
FaiI YATR 3 cut(s) 42, 103, 206
FatI CATG 1 cut(s) 101
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 214
HaeIII GGCC 2 cut(s) 50, 226
HapII CCGG 2 cut(s) 29, 153
HhaI GCGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 105
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HpaII CCGG 2 cut(s) 29, 153
HphI GGTGA 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 62, 193
Hpy99I CGWCG 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 80
Hsp92II CATG 1 cut(s) 105
HspAI GCGC 1 cut(s) 213
LpnPI CCDG 3 cut(s) 42, 47, 166
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 1 cut(s) 164
MseI TTAA 1 cut(s) 162
MspI CCGG 2 cut(s) 29, 153
MspR9I CCNGG 1 cut(s) 154
NciI CCSGG 1 cut(s) 154
NlaIII CATG 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 105
PceI AGGCCT 1 cut(s) 50
PciI ACATGT 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 156
PinAI ACCGGT 1 cut(s) 28
PscI ACATGT 1 cut(s) 101
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 162
ScrFI CCNGG 1 cut(s) 154
SetI ASST 2 cut(s) 14, 71
SgrAI CRCCGGYG 1 cut(s) 28
SpeI ACTAGT 1 cut(s) 133
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 134
StuI AGGCCT 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 152
StyI CCWWGG 2 cut(s) 45, 227
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 112
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspRI CASTG 1 cut(s) 222
Van91I CCANNNNNTGG 1 cut(s) 156
XceI RCATGY 1 cut(s) 105
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.