RchiOBHm_Chr1g0348971

2-amino-3-ketobutyrate coenzyme A ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
42051781 .. 42052349
569 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGCGGAAGAAAGTTGTTGTGACTGATAGCTTGTTTAGAATGGATGGAGACTTTGCACCAATGACCGAGCTGGTGAAGCTATGCAAGCAGCATGACTTTCTGTTAGTCATTGATGATGCAAGTACTCTTGAGTTATTGGGAACACAAACAGTTCAAAAGTGTTTCAACTTTCAAGCCTGTCTTGTACATACTACTGTACACATATTTTTTACGCTAACCTTTTTAGTAAATTCATCATATTCATTGGAAAACCAGATCATAAAAAGTTCAGTATTTCAGAGTGTGATTATAGTACTAATGAATTGTCCAATTACACCAGGAGGTCAACTAGTCCTGTTGATTGAATTTGTATATATGAAAGAAAAAGTGGCTCTTGTTACTATAAACTTTCATATAGATATTAGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.52

Weight (kDa)

6.39

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AcsI RAATTY 2 cut(s) 229, 344
AfaI GTAC 4 cut(s) 124, 186, 198, 294
AgsI TTSAA 4 cut(s) 155, 166, 173, 344
AhlI ACTAGT 1 cut(s) 328
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 3 cut(s) 30, 70, 79
AluI AGCT 3 cut(s) 30, 70, 79
Alw26I GTCTC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 229, 344
AsuHPI GGTGA 1 cut(s) 85
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 42
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 1 cut(s) 329
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmcAI AGTACT 2 cut(s) 124, 294
Bme1390I CCNGG 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 318
BseGI GGATG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 42
Bsp1407I TGTACA 2 cut(s) 184, 196
Bsp143I GATC 1 cut(s) 255
BspACI CCGC 1 cut(s) 4
BsrGI TGTACA 2 cut(s) 184, 196
BssMI GATC 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 151, 196
BstAUI TGTACA 2 cut(s) 184, 196
BstC8I GCNNGC 1 cut(s) 86
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 258
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 255
BstMWI GCNNNNNNNGC 2 cut(s) 76, 85
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 86
Csp6I GTAC 4 cut(s) 123, 185, 197, 293
CviAII CATG 1 cut(s) 92
CviJI RGCY 5 cut(s) 30, 70, 79, 176, 371
CviKI_1 RGCY 5 cut(s) 30, 70, 79, 176, 371
CviQI GTAC 4 cut(s) 123, 185, 197, 293
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 316
FaeI CATG 1 cut(s) 95
FalI AAGNNNNNCTT 4 cut(s) 165, 197, 357, 389
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 329
GluI GCNGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 95
HincII GTYRAC 1 cut(s) 326
HindII GTYRAC 1 cut(s) 326
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 199, 326
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 2 cut(s) 199, 326
HpyCH4III ACNGT 2 cut(s) 151, 196
HpyCH4V TGCA 3 cut(s) 56, 84, 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 85
Hsp92II CATG 1 cut(s) 95
Kzo9I GATC 1 cut(s) 255
LpnPI CCDG 6 cut(s) 56, 190, 266, 303, 330, 347
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 2 cut(s) 19, 376
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 1 cut(s) 19
MluCI AATT 4 cut(s) 229, 301, 309, 344
MnlI CCTC 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 76, 85
NdeII GATC 1 cut(s) 255
NlaIII CATG 1 cut(s) 95
NmuCI GTSAC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
RsaI GTAC 4 cut(s) 124, 186, 198, 294
RsaNI GTAC 4 cut(s) 123, 185, 197, 293
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 255
ScaI AGTACT 2 cut(s) 124, 294
ScrFI CCNGG 1 cut(s) 318
SetI ASST 5 cut(s) 32, 72, 81, 221, 325
SfaNI GCATC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 4 cut(s) 229, 301, 309, 344
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 151, 196
TaqII GACCGA 1 cut(s) 80
TasI AATT 4 cut(s) 229, 301, 309, 344
TatI WGTACW 4 cut(s) 122, 184, 196, 292
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 5 cut(s) 222, 231, 314, 371, 380
XapI RAATTY 2 cut(s) 229, 344
XspI CTAG 1 cut(s) 329
ZrmI AGTACT 2 cut(s) 124, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.