RchiOBHm_Chr1g0348981

2-amino-3-ketobutyrate coenzyme A ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
42052351 .. 42053495
1145 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGCTGGTAATCAACTGTTCATGCAGCAAAAGATGGAAGCAACTCATACAGTCACGAGGACGCTCCTTTATATTTTCAACTGCTGCACCATTACCAATTGCTGCTGAGGCCCATGCTGCTGTTATTGTCGAAAGGAAACATGGCGTAGAAGGGCAATTTGGAGTCGGGTGCAAGATTTTCTGCTCTCACTGGAATTCCCATAAAGTCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

7.77

Weight (kDa)

9.69

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 193
AgsI TTSAA 1 cut(s) 78
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 4 cut(s) 24, 83, 101, 116
ApoI RAATTY 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 109
BauI CACGAG 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 4 cut(s) 36, 70, 88, 103
BccI CCATC 1 cut(s) 27
BisI GCNGC 4 cut(s) 25, 84, 102, 117
BlsI GCNGC 4 cut(s) 26, 85, 103, 118
BmgT120I GGNCC 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 4 cut(s) 36, 70, 88, 103
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 110
BsnI GGCC 1 cut(s) 110
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 194
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 17, 51
BstDEI CTNAG 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 107, 116
BstV1I GCAGC 4 cut(s) 36, 70, 88, 103
BsuRI GGCC 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 109
CseI GACGC 1 cut(s) 69
CviAII CATG 3 cut(s) 21, 113, 140
CviJI RGCY 1 cut(s) 110
CviKI_1 RGCY 1 cut(s) 110
DdeI CTNAG 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 193
FaeI CATG 3 cut(s) 24, 116, 143
FaiI YATR 6 cut(s) 22, 47, 71, 114, 141, 201
FatI CATG 3 cut(s) 20, 112, 139
Fnu4HI GCNGC 4 cut(s) 25, 84, 102, 117
Fsp4HI GCNGC 4 cut(s) 25, 84, 102, 117
GluI GCNGC 4 cut(s) 25, 84, 102, 117
HaeIII GGCC 1 cut(s) 110
HgaI GACGC 1 cut(s) 69
Hin1II CATG 3 cut(s) 24, 116, 143
HinfI GANTC 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 17, 51
HpyCH4V TGCA 3 cut(s) 24, 86, 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 116
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 3 cut(s) 24, 116, 143
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 1 cut(s) 175
Lsp1109I GCAGC 4 cut(s) 36, 70, 88, 103
MaeIII GTNAC 1 cut(s) 51
MfeI CAATTG 1 cut(s) 96
MluCI AATT 3 cut(s) 96, 155, 193
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 2 cut(s) 50, 100
MunI CAATTG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 107, 116
NlaIII CATG 3 cut(s) 24, 116, 143
NmuCI GTSAC 1 cut(s) 51
PkrI GCNGC 4 cut(s) 26, 85, 103, 118
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 109
SatI GCNGC 4 cut(s) 25, 84, 102, 117
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 171
SgeI CNNG 9 cut(s) 17, 33, 66, 68, 125, 152, 178, 184, 202
Sse9I AATT 3 cut(s) 96, 155, 193
TaaI ACNGT 2 cut(s) 17, 51
TaqI TCGA 1 cut(s) 129
TasI AATT 3 cut(s) 96, 155, 193
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 4 cut(s) 24, 83, 101, 116
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 9
TspRI CASTG 1 cut(s) 194
XapI RAATTY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.