RchiOBHm_Chr1g0348991

2-amino-3-ketobutyrate coenzyme A ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
42053497 .. 42054286
790 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGCAGCTTATTTTTCACCTACATCCCACTAGACTAACTTTTTTTATCATCATTGGACCGGGTTTCCATGTGACTGCAATCAGACCCCCAACGGTGCCGCCCAACTTATGCAGGCTACGAGTGACTTTGAGTGCAACACACACAAGGGCTGATATTGAGAGGTTCACAACTGCACTCTCCAATTGTGTAAATTTCCAAGAAATCGGCATCCATGGCTCCAATGGATATGCAAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.87

Weight (kDa)

10.58

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AciI CCGC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 190
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 16
BcnI CCSGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 5, 98
BlsI GCNGC 2 cut(s) 6, 99
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 96, 217
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 2 cut(s) 22, 207
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 59
Bsp19I CCATGG 1 cut(s) 211
BspACI CCGC 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 96, 217
BspT107I GGYRCC 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 22, 207
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 2 cut(s) 22, 207
Cac8I GCNNGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 56
CviAII CATG 2 cut(s) 68, 212
CviJI RGCY 5 cut(s) 7, 115, 149, 216, 235
CviKI_1 RGCY 5 cut(s) 7, 115, 149, 216, 235
Eco130I CCWWGG 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 2 cut(s) 71, 215
FaiI YATR 4 cut(s) 69, 109, 213, 228
FatI CATG 2 cut(s) 67, 211
Fnu4HI GCNGC 2 cut(s) 5, 98
FokI GGATG 2 cut(s) 9, 194
Fsp4HI GCNGC 2 cut(s) 5, 98
FspBI CTAG 1 cut(s) 30
GluI GCNGC 2 cut(s) 5, 98
HapII CCGG 1 cut(s) 59
Hin1II CATG 2 cut(s) 71, 215
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 8
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 165
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 6 cut(s) 4, 77, 111, 134, 173, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 71, 215
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 2 cut(s) 72, 97
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 70, 121
MfeI CAATTG 1 cut(s) 181
MluCI AATT 2 cut(s) 181, 190
MnlI CCTC 1 cut(s) 153
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 213
NciI CCSGG 1 cut(s) 60
NcoI CCATGG 1 cut(s) 211
NlaIII CATG 2 cut(s) 71, 215
NlaIV GGNNCC 2 cut(s) 96, 217
NmuCI GTSAC 2 cut(s) 70, 121
PkrI GCNGC 2 cut(s) 6, 99
PspN4I GGNNCC 2 cut(s) 96, 217
PspPI GGNCC 1 cut(s) 56
SatI GCNGC 2 cut(s) 5, 98
Sau96I GGNCC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 60
SetI ASST 3 cut(s) 9, 21, 164
SfaNI GCATC 1 cut(s) 216
SgeI CNNG 9 cut(s) 42, 71, 72, 80, 124, 131, 156, 209, 224
SinI GGWCC 1 cut(s) 56
Sse9I AATT 2 cut(s) 181, 190
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 94
TasI AATT 2 cut(s) 181, 190
TauI GCSGC 1 cut(s) 100
TseFI GTSAC 2 cut(s) 70, 121
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 70, 121
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.