RchiOBHm_Chr1g0349571

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
42649786 .. 42652510
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGGTAGATGTTCATAATCTTATCGATAGTTTGGCTTTTGGGTCATGGAATTTCTATTCCTGCCCCCTGTTGTCTTGTTTTTGGCTTAAGATGGAGAATTCTGATTTTAGCAATTTCATTTCATTTTTAAATCACGGATTCATTTATGGGAATCAGATTTTCTTATATATGATTGTTATCTGTAGTATATATAGGTTCGTCTCGGTATTGGGAAGCTTGGAATCAATGATGCCTCTTCACAGCGCCATTGCTTCTGCTCGGCTCAAGTCCAACATTGCCTTCGATTCCACTTGCTGGAGTTGCCTTTCTCAGGTTGCTGCAGTTAACCTTCTGTTGAGTTGCTTGTTGGTTCTTTTGAGGAGCATTGTCAGTCATGGGGTTGAAAAGCCAGCTATCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.9

Weight (kDa)

6.37

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 294
AcsI RAATTY 2 cut(s) 49, 97
AfiI CCNNNNNNNGG 2 cut(s) 294, 310
AflII CTTAAG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 383
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 2 cut(s) 216, 392
AluI AGCT 2 cut(s) 216, 392
Alw26I GTCTC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 2 cut(s) 49, 97
AspLEI GCGC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 205
BfmI CTRYAG 2 cut(s) 181, 318
BfoI RGCGCY 1 cut(s) 246
BfrI CTTAAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmsI GCATC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 248
Bsa29I ATCGAT 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 310
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 2 cut(s) 246, 273
Bse8I GATNNNNATC 1 cut(s) 176
BseCI ATCGAT 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 294, 310
BseMI GCAATG 2 cut(s) 246, 273
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 373
BseXI GCAGC 1 cut(s) 304
BshVI ATCGAT 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 294, 310
BsmAI GTCTC 1 cut(s) 205
BsmBI CGTCTC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 322
BspDI ATCGAT 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 322
BspTI CTTAAG 1 cut(s) 86
BsrDI GCAATG 2 cut(s) 246, 273
BsrI ACTGG 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 240
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 309
BstENI CCTNNNNNAGG 1 cut(s) 308
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstMAI GTCTC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstSFI CTRYAG 2 cut(s) 181, 318
BstV1I GCAGC 1 cut(s) 304
Bsu15I ATCGAT 1 cut(s) 24
BsuTUI ATCGAT 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 24
CviAII CATG 2 cut(s) 45, 374
CviJI RGCY 6 cut(s) 35, 85, 216, 262, 388, 392
CviKI_1 RGCY 6 cut(s) 35, 85, 216, 262, 388, 392
DdeI CTNAG 1 cut(s) 309
DraI TTTAAA 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 2 cut(s) 48, 377
FatI CATG 2 cut(s) 44, 373
Fnu4HI GCNGC 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 318
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 316
HaeII RGCGCY 1 cut(s) 246
HhaI GCGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 48, 377
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 4 cut(s) 138, 151, 221, 284
HpaI GTTAAC 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 103, 156
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 289, 338
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 2 cut(s) 48, 377
HspAI GCGC 1 cut(s) 243
KspAI GTTAAC 1 cut(s) 325
LmnI GCTCC 1 cut(s) 360
LpnPI CCDG 4 cut(s) 73, 80, 280, 296
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 219
MboII GAAGA 1 cut(s) 227
MluCI AATT 3 cut(s) 49, 97, 112
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 2 cut(s) 243, 351
MseI TTAA 3 cut(s) 87, 128, 324
MspCI CTTAAG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 300
NlaIII CATG 2 cut(s) 48, 377
NmeAIII GCCGAG 1 cut(s) 238
PfeI GAWTC 4 cut(s) 138, 151, 221, 284
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 1 cut(s) 319
PstI CTGCAG 1 cut(s) 322
SaqAI TTAA 3 cut(s) 87, 128, 324
SatI GCNGC 1 cut(s) 318
SetI ASST 5 cut(s) 197, 218, 315, 330, 394
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 2 cut(s) 181, 318
SmlI CTYRAG 2 cut(s) 86, 263
SmoI CTYRAG 2 cut(s) 86, 263
Sse9I AATT 3 cut(s) 49, 97, 112
TaqI TCGA 2 cut(s) 24, 282
TasI AATT 3 cut(s) 49, 97, 112
TfiI GAWTC 4 cut(s) 138, 151, 221, 284
Tru1I TTAA 3 cut(s) 87, 128, 324
Tru9I TTAA 3 cut(s) 87, 128, 324
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 106, 111, 130
TspGWI ACGGA 1 cut(s) 150
Van91I CCANNNNNTGG 1 cut(s) 294
Vha464I CTTAAG 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 2 cut(s) 49, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.