RchiOBHm_Chr1g0349591

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
42657201 .. 42657362
162 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 162 bp
ATGAATGTAGGGGTGGGTGCCTCAACTGACAAGAGGGTTAGATGGCCTGGTTTTCATGTGCTTAATGGTCCACAGGAGGTCAGCCCCTTCACAGTTAGTCGTTTCATTCAAGGAGAGTCATGGATTCTAGGCACTGGTGTGCCAGTTTGGCTTGGAATATAA

Protein Analysis

53

Amino Acids

5.78

Weight (kDa)

8.52

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 1 - 39 1.1e-08 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 46
AleI CACNNNNGTG 1 cut(s) 137
AoxI GGCC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 68
AvaII GGWCC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 17
BccI CCATC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 48
BfaI CTAG 1 cut(s) 128
BglI GCCNNNNNGGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 48
Bse1I ACTGG 2 cut(s) 139, 143
BseBI CCWGG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 139, 143
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 17
BsnI GGCC 1 cut(s) 46
BspANI GGCC 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 17
BsrI ACTGG 2 cut(s) 139, 143
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BsuRI GGCC 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 68
CviAII CATG 2 cut(s) 56, 120
CviJI RGCY 3 cut(s) 46, 84, 151
CviKI_1 RGCY 3 cut(s) 46, 84, 151
Eco47I GGWCC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 46
FaeI CATG 2 cut(s) 59, 123
FaiI YATR 3 cut(s) 57, 121, 160
FatI CATG 2 cut(s) 55, 119
FspBI CTAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 2 cut(s) 59, 123
HinfI GANTC 2 cut(s) 116, 124
Hpy166II GTNNAC 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
Hsp92II CATG 2 cut(s) 59, 123
LpnPI CCDG 5 cut(s) 33, 59, 60, 120, 156
MaeI CTAG 1 cut(s) 128
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 3 cut(s) 27, 31, 70
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 148
NlaIII CATG 2 cut(s) 59, 123
NlaIV GGNNCC 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 137
PfeI GAWTC 1 cut(s) 124
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 48
SetI ASST 1 cut(s) 81
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 137
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 94
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 139
TspDTI ATGAA 3 cut(s) 17, 44, 94
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 68
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.