RchiOBHm_Chr1g0349981

UDP-glucuronate 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
43123008 .. 43124011
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGACCCAGCTCAAGCAAATGTCTCATCTTGACAATGGCCCCCCAACTCCAGGCAAGTTCAAGCCCTACATTCACAGAGTCCGATGGCACAGCTCCCTCGCCAAGCTCACATTGTGGTCCTTCGTCTTCTTGGCCCTGATCTTGCTCTTCTTTTTCCGGTCGCCGTCGTCCAATTCCCTCCCCTCCGATCCATCCCGCCGCTCCCTCAGAACCTACAACTGGGGCGGACCCGCCTGGGAGAAACGGGTCCGGTCCTCCGCCCGGGTCCGGTCCAGAAACGGCATGTCGGTGCTCGTCACCGGCGCCGCCGGGTTCGTCGGCACCCACGTCTCCGCCGCCCTCAAGCGCCGAGGGGACGGCGTTTTGGGGCTCGACAGCTTCAATGACTACTACGACCCGTCGTTGAAGAGAGCGAGGCAGGCGCTTTTGGAGCGCAGTGGGGTGTTCATTGTGGAAGGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Epimerase GDP_Man_Dehyd

Protein Analysis

154

Amino Acids

17.27

Weight (kDa)

11.28

Isoelectric Point (pI)

67.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 302, 320
AccBSI CCGCTC 1 cut(s) 201
AciI CCGC 8 cut(s) 196, 199, 225, 231, 258, 306, 333, 336
AclWI GGATC 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 114
AfiI CCNNNNNNNGG 4 cut(s) 50, 219, 261, 267
AgsI TTSAA 3 cut(s) 61, 382, 406
AjiI CACGTC 1 cut(s) 328
AjnI CCWGG 2 cut(s) 49, 233
AluBI AGCT 4 cut(s) 10, 93, 106, 378
AluI AGCT 4 cut(s) 10, 93, 106, 378
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 2 cut(s) 27, 334
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 2 cut(s) 37, 132
AspLEI GCGC 4 cut(s) 305, 348, 424, 435
AspS9I GGNCC 8 cut(s) 38, 117, 133, 227, 247, 252, 265, 270
AsuC2I CCSGG 3 cut(s) 262, 263, 310
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 6 cut(s) 117, 227, 247, 252, 265, 270
BanI GGYRCC 2 cut(s) 302, 320
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 294
BccI CCATC 2 cut(s) 78, 199
BceAI ACGGC 3 cut(s) 148, 295, 373
BciT130I CCWGG 2 cut(s) 51, 235
BcnI CCSGG 3 cut(s) 262, 263, 310
BcoDI GTCTC 2 cut(s) 27, 334
BfoI RGCGCY 3 cut(s) 306, 349, 425
BisI GCNGC 3 cut(s) 199, 306, 336
BlsI GCNGC 3 cut(s) 200, 307, 337
Bme1390I CCNGG 5 cut(s) 51, 235, 262, 263, 310
Bme18I GGWCC 6 cut(s) 117, 227, 247, 252, 265, 270
BmeT110I CYCGRG 1 cut(s) 261
BmgBI CACGTC 1 cut(s) 328
BmgT120I GGNCC 8 cut(s) 38, 117, 133, 227, 247, 252, 265, 270
BmiI GGNNCC 6 cut(s) 40, 229, 248, 266, 304, 322
BmrFI CCNGG 5 cut(s) 51, 235, 262, 263, 310
BmrI ACTGGG 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 3 cut(s) 262, 263, 310
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 234, 261, 349
BsaWI WCCGGW 3 cut(s) 156, 249, 267
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 219, 261, 267
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 2 cut(s) 51, 235
BseDI CCNNGG 3 cut(s) 234, 261, 349
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 4 cut(s) 50, 219, 261, 267
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 6
Bsh1285I CGRYCG 1 cut(s) 161
BshFI GGCC 2 cut(s) 39, 134
BshNI GGYRCC 2 cut(s) 302, 320
BsiEI CGRYCG 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 6 cut(s) 157, 250, 262, 268, 300, 309
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 4 cut(s) 50, 219, 261, 267
BsmAI GTCTC 2 cut(s) 27, 334
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 368
BsnI GGCC 2 cut(s) 39, 134
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 294, 372
Bsp143I GATC 2 cut(s) 138, 187
BspACI CCGC 8 cut(s) 196, 199, 225, 231, 258, 306, 333, 336
BspANI GGCC 2 cut(s) 39, 134
BspCNI CTCAG 1 cut(s) 219
BspLI GGNNCC 6 cut(s) 40, 229, 248, 266, 304, 322
BspPI GGATC 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 152
BspT107I GGYRCC 2 cut(s) 302, 320
BsrBI CCGCTC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 234, 261, 349
BssMI GATC 2 cut(s) 138, 187
BssNI GRCGYC 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 51, 235
Bst6I CTCTTC 2 cut(s) 152, 401
BstACI GRCGYC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 191
BstH2I RGCGCY 3 cut(s) 306, 349, 425
BstHHI GCGC 4 cut(s) 305, 348, 424, 435
BstKTI GATC 2 cut(s) 141, 190
BstMAI GTCTC 2 cut(s) 27, 334
BstMBI GATC 2 cut(s) 138, 187
BstMCI CGRYCG 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 419, 430
BstNI CCWGG 2 cut(s) 51, 235
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 5 cut(s) 49, 233, 260, 261, 308
BstV2I GAAGAC 1 cut(s) 118
BsuRI GGCC 2 cut(s) 39, 134
BtrI CACGTC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 420
CfoI GCGC 4 cut(s) 305, 348, 424, 435
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 8 cut(s) 38, 117, 133, 227, 247, 252, 265, 270
Cfr9I CCCGGG 1 cut(s) 261
CviAII CATG 1 cut(s) 283
CviJI RGCY 8 cut(s) 10, 39, 64, 93, 106, 134, 370, 378
CviKI_1 RGCY 8 cut(s) 10, 39, 64, 93, 106, 134, 370, 378
DdeI CTNAG 1 cut(s) 206
DinI GGCGCC 1 cut(s) 304
DpnI GATC 2 cut(s) 140, 189
DpnII GATC 2 cut(s) 138, 187
DraIII CACNNNGTG 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 152, 401
EarI CTCTTC 2 cut(s) 152, 401
EciI GGCGGA 3 cut(s) 240, 247, 322
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 6 cut(s) 117, 227, 247, 252, 265, 270
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 49, 233
EcoT38I GRGCYC 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 1 cut(s) 286
FaiI YATR 2 cut(s) 284, 463
FaqI GGGAC 1 cut(s) 368
FatI CATG 1 cut(s) 282
FauI CCCGC 2 cut(s) 203, 238
Fnu4HI GCNGC 3 cut(s) 199, 306, 336
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 3 cut(s) 199, 306, 336
GlaI GCGC 4 cut(s) 304, 347, 423, 434
GluI GCNGC 3 cut(s) 199, 306, 336
GsaI CCCAGC 1 cut(s) 10
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 3 cut(s) 306, 349, 425
HaeIII GGCC 2 cut(s) 39, 134
HapII CCGG 6 cut(s) 157, 250, 262, 268, 300, 309
HhaI GCGC 4 cut(s) 305, 348, 424, 435
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 4 cut(s) 303, 346, 422, 433
HinP1I GCGC 4 cut(s) 303, 346, 422, 433
HinfI GANTC 1 cut(s) 78
HpaII CCGG 6 cut(s) 157, 250, 262, 268, 300, 309
HphI GGTGA 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 83, 187, 209
Hpy188III TCNNGA 2 cut(s) 29, 273
Hpy99I CGWCG 3 cut(s) 169, 320, 403
HpyAV CCTTC 2 cut(s) 130, 449
HpyCH4IV ACGT 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 430
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 4 cut(s) 303, 346, 422, 433
KasI GGCGCC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 138, 187
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 3 cut(s) 98, 206, 430
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 140, 189
MbiI CCGCTC 1 cut(s) 201
MboI GATC 2 cut(s) 138, 187
MboII GAAGA 3 cut(s) 118, 139, 418
MhlI GDGCHC 2 cut(s) 294, 372
MluCI AATT 1 cut(s) 172
Mly113I GGCGCC 1 cut(s) 303
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 8 cut(s) 107, 188, 193, 215, 265, 344, 350, 408
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 6 cut(s) 157, 250, 262, 268, 300, 309
MspR9I CCNGG 5 cut(s) 51, 235, 262, 263, 310
MvaI CCWGG 2 cut(s) 51, 235
MwoI GCNNNNNNNGC 2 cut(s) 419, 430
NarI GGCGCC 1 cut(s) 303
NciI CCSGG 3 cut(s) 262, 263, 310
NdeII GATC 2 cut(s) 138, 187
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 6 cut(s) 40, 229, 248, 266, 304, 322
NmeAIII GCCGAG 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PkrI GCNGC 3 cut(s) 200, 307, 337
PleI GAGTC 1 cut(s) 86
PluTI GGCGCC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 49, 233
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 2 cut(s) 49, 233
PspN4I GGNNCC 6 cut(s) 40, 229, 248, 266, 304, 322
PspPI GGNCC 8 cut(s) 38, 117, 133, 227, 247, 252, 265, 270
RseI CAYNNNNRTG 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 152
SatI GCNGC 3 cut(s) 199, 306, 336
Sau3AI GATC 2 cut(s) 138, 187
Sau96I GGNCC 8 cut(s) 38, 117, 133, 227, 247, 252, 265, 270
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 5 cut(s) 51, 235, 262, 263, 310
SduI GDGCHC 2 cut(s) 294, 372
SetI ASST 6 cut(s) 12, 95, 108, 215, 330, 380
SfoI GGCGCC 1 cut(s) 304
SgrAI CRCCGGYG 1 cut(s) 299
SinI GGWCC 6 cut(s) 117, 227, 247, 252, 265, 270
SmaI CCCGGG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 11, 341
SmoI CTYRAG 2 cut(s) 11, 341
Sse9I AATT 1 cut(s) 172
SsiI CCGC 8 cut(s) 196, 199, 225, 231, 258, 306, 333, 336
SspDI GGCGCC 1 cut(s) 302
StyD4I CCNGG 5 cut(s) 49, 233, 260, 261, 308
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 372
TasI AATT 1 cut(s) 172
TauI GCSGC 3 cut(s) 201, 308, 338
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 436
TspMI CCCGGG 1 cut(s) 261
TspRI CASTG 1 cut(s) 442
VpaK11BI GGWCC 6 cut(s) 117, 227, 247, 252, 265, 270
XceI RCATGY 1 cut(s) 286
XmaI CCCGGG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.