RchiOBHm_Chr1g0350071

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
43190177 .. 43190708
532 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGCTTGCGCATCAGAAAAGAGACTGTTTGCTAGCCAAAGTAGGTCGTAGCCAAACAAGATTGATTTGTTTTTTTTTTTTTTTTAGAGTGGATGATACGAATCAGGAGACAGAGGAGGTTCATAGACTGTTCAGATCTACTGCTAGCGATTGCATTGTGGAAGACCGGAGTTCATTCGTTGCGTTTCAAGCCAATACTGGTGTTGAGGTTTGCACATTCCGTCTGGTTGTAAAAAATGCTACATCATTGCTTGGTGATAAGGATCCTTTAAAATTGGAAGCGGAATCTATGCTCAACGATCTTATAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.8

Weight (kDa)

6.09

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
Acc16I TGCGCA 1 cut(s) 9
AciI CCGC 1 cut(s) 281
AclWI GGATC 2 cut(s) 257, 270
AgsI TTSAA 1 cut(s) 188
Alw26I GTCTC 2 cut(s) 15, 101
AlwI GGATC 2 cut(s) 257, 270
AspLEI GCGC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 266
AsuNHI GCTAGC 2 cut(s) 31, 143
BamHI GGATCC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 15, 101
BfaI CTAG 2 cut(s) 32, 144
BglII AGATCT 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 1 cut(s) 19
BmtI GCTAGC 2 cut(s) 35, 147
BpiI GAAGAC 1 cut(s) 168
BsaBI GATNNNNATC 2 cut(s) 99, 261
BsaWI WCCGGW 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 245
Bse8I GATNNNNATC 2 cut(s) 99, 261
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 2 cut(s) 99, 261
BseMI GCAATG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 15, 101
Bsp143I GATC 3 cut(s) 134, 262, 298
BspACI CCGC 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 264
BspOI GCTAGC 2 cut(s) 35, 147
BspPI GGATC 2 cut(s) 257, 270
BsrDI GCAATG 1 cut(s) 245
BsrI ACTGG 1 cut(s) 202
BssMI GATC 3 cut(s) 134, 262, 298
Bst4CI ACNGT 2 cut(s) 26, 129
BstC8I GCNNGC 3 cut(s) 6, 33, 145
BstF5I GGATG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 3 cut(s) 137, 265, 301
BstMAI GTCTC 2 cut(s) 15, 101
BstMBI GATC 3 cut(s) 134, 262, 298
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 2 cut(s) 134, 262
BstYI RGATCY 2 cut(s) 134, 262
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 3 cut(s) 6, 33, 145
CfoI GCGC 1 cut(s) 10
CviJI RGCY 3 cut(s) 35, 51, 191
CviKI_1 RGCY 3 cut(s) 35, 51, 191
DpnI GATC 3 cut(s) 136, 264, 300
DpnII GATC 3 cut(s) 134, 262, 298
DraI TTTAAA 1 cut(s) 270
FaiI YATR 3 cut(s) 123, 290, 305
FokI GGATG 1 cut(s) 104
FspBI CTAG 2 cut(s) 32, 144
FspI TGCGCA 1 cut(s) 9
GlaI GCGC 1 cut(s) 9
HapII CCGG 1 cut(s) 166
HhaI GCGC 1 cut(s) 10
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 2 cut(s) 100, 284
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 2 cut(s) 15, 134
Hpy188III TCNNGA 1 cut(s) 104
HpyCH4III ACNGT 2 cut(s) 26, 129
HpyCH4V TGCA 2 cut(s) 153, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 3 cut(s) 134, 262, 298
LpnPI CCDG 4 cut(s) 89, 179, 183, 209
LweI GCATC 1 cut(s) 19
MaeI CTAG 2 cut(s) 32, 144
MalI GATC 3 cut(s) 136, 264, 300
MboI GATC 3 cut(s) 134, 262, 298
MboII GAAGA 1 cut(s) 173
MflI RGATCY 2 cut(s) 134, 262
MluCI AATT 1 cut(s) 272
MnlI CCTC 3 cut(s) 106, 109, 199
MseI TTAA 1 cut(s) 269
MspI CCGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 3 cut(s) 134, 262, 298
NheI GCTAGC 2 cut(s) 31, 143
NlaIV GGNNCC 1 cut(s) 264
NsbI TGCGCA 1 cut(s) 9
PfeI GAWTC 2 cut(s) 100, 284
PsiI TTATAA 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 264
PsuI RGATCY 2 cut(s) 134, 262
SaqAI TTAA 1 cut(s) 269
Sau3AI GATC 3 cut(s) 134, 262, 298
SetI ASST 4 cut(s) 46, 120, 210, 311
SfaNI GCATC 1 cut(s) 19
Sse9I AATT 1 cut(s) 272
SsiI CCGC 1 cut(s) 281
SspMI CTAG 2 cut(s) 32, 144
TaaI ACNGT 2 cut(s) 26, 129
TasI AATT 1 cut(s) 272
TfiI GAWTC 2 cut(s) 100, 284
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 110, 162
TspGWI ACGGA 1 cut(s) 209
XspI CTAG 2 cut(s) 32, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.