RchiOBHm_Chr1g0350221

Wax ester synthase-like Acyl-CoA acyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029523
Physical Location & Seq
Forward (+)
43384265 .. 43386983
2719 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 537 bp
ATGGGCGCTCATCTCTCTTGTCTCCAAAATGCTCACAATCCTTCTCTTCCCCTGACATTTCCTTCACTAAAGGGTGCAAAGAATGAAACTAGTAGTCTGTCTCGTGTGTTTGAGTTTGTGCCTAAGATACTTTCTGTCGTTATCAACGTTGCATGGGATTTCAGTTGGAGCATTTTGAAGGGCACTTGGGTTGAAGATGATCGAACACCAACAAGGTCCGGCGTTGTTGGAGTTGAGTTTCGGCCTGTGTCCATGTCGACCTTGATGCTGTCTATTGAAGAAATCAAAATTATTAAGAACAAGCTTGGGGTGACGATAAATGATGTTATTGAGGGAATAACCTTTCTGGGCACCCGAATGTACATGCAACGGATGAATAGTGAAAAATCAAGTAGCCAGAATTGCACGGCACTCGTGTTGCTAAATACTAGACTTGCTGCGGGTTACAAGTCGCTGCAGGAGATGTTGATGGAACCAAGCGTCTTCTTGGGGCAACCGATTTGTGTTCTTGCATGTCTCGGTGCCCAAGTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

178

Amino Acids

19.61

Weight (kDa)

7.66

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029523)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0350221
rosa_roxburghii Rroxscaffold_4G00304980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 350, 521
AccI GTMKAC 1 cut(s) 257
AciI CCGC 1 cut(s) 440
AclI AACGTT 1 cut(s) 147
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 3 cut(s) 178, 194, 278
AhlI ACTAGT 1 cut(s) 89
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw26I GTCTC 3 cut(s) 26, 105, 521
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 437, 454
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 1 cut(s) 216
BaeGI GKGCMC 3 cut(s) 185, 353, 526
BanI GGYRCC 2 cut(s) 350, 521
BauI CACGAG 2 cut(s) 102, 413
BbsI GAAGAC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 424, 441
BccI CCATC 1 cut(s) 463
BceAI ACGGC 1 cut(s) 423
BcgI CGANNNNNNTGC 4 cut(s) 247, 281, 394, 428
BcoDI GTCTC 3 cut(s) 26, 105, 521
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 2 cut(s) 90, 429
BfmI CTRYAG 1 cut(s) 455
BfoI RGCGCY 1 cut(s) 9
BisI GCNGC 2 cut(s) 438, 455
BlsI GCNGC 2 cut(s) 439, 456
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 3 cut(s) 352, 474, 523
BmsI GCATC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 475
BseGI GGATG 1 cut(s) 378
BseSI GKGCMC 3 cut(s) 185, 353, 526
BseXI GCAGC 2 cut(s) 424, 441
BshFI GGCC 1 cut(s) 244
BshNI GGYRCC 2 cut(s) 350, 521
BsiSI CCGG 1 cut(s) 219
BsmAI GTCTC 3 cut(s) 26, 105, 521
BsnI GGCC 1 cut(s) 244
Bsp1286I GDGCHC 3 cut(s) 185, 353, 526
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 1 cut(s) 440
BspANI GGCC 1 cut(s) 244
BspLI GGNNCC 3 cut(s) 352, 474, 523
BspMAI CTGCAG 1 cut(s) 459
BspT107I GGYRCC 2 cut(s) 350, 521
BsrGI TGTACA 1 cut(s) 360
BssMI GATC 1 cut(s) 199
BssSI CACGAG 2 cut(s) 102, 413
Bst2BI CACGAG 2 cut(s) 102, 413
Bst6I CTCTTC 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 3 cut(s) 26, 105, 521
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNSI RCATGY 2 cut(s) 367, 516
BstSFI CTRYAG 1 cut(s) 455
BstSLI GKGCMC 3 cut(s) 185, 353, 526
BstV1I GCAGC 2 cut(s) 424, 441
BstV2I GAAGAC 1 cut(s) 475
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 378
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 361
CviAII CATG 4 cut(s) 153, 253, 364, 513
CviJI RGCY 3 cut(s) 244, 304, 396
CviKI_1 RGCY 3 cut(s) 244, 304, 396
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 216
FaeI CATG 4 cut(s) 156, 256, 367, 516
FaiI YATR 4 cut(s) 154, 254, 365, 514
FatI CATG 4 cut(s) 152, 252, 363, 512
FauI CCCGC 1 cut(s) 433
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 438, 455
FokI GGATG 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 438, 455
FspBI CTAG 2 cut(s) 90, 429
GlaI GCGC 1 cut(s) 7
GluI GCNGC 2 cut(s) 438, 455
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 469
HhaI GCGC 1 cut(s) 8
Hin1II CATG 4 cut(s) 156, 256, 367, 516
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 302
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 3 cut(s) 51, 72, 172
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 6 cut(s) 77, 152, 367, 405, 457, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 4 cut(s) 156, 256, 367, 516
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 6 cut(s) 65, 232, 258, 332, 410, 443
Lsp1109I GCAGC 2 cut(s) 424, 441
LweI GCATC 1 cut(s) 255
MaeI CTAG 2 cut(s) 90, 429
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 310, 443
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 4 cut(s) 38, 206, 290, 475
MhlI GDGCHC 3 cut(s) 185, 353, 526
MluCI AATT 2 cut(s) 288, 400
MmeI TCCRAC 2 cut(s) 146, 208
MnlI CCTC 1 cut(s) 325
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 356
MspI CCGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 402
NdeII GATC 1 cut(s) 199
NlaIII CATG 4 cut(s) 156, 256, 367, 516
NlaIV GGNNCC 3 cut(s) 352, 474, 523
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 2 cut(s) 367, 516
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PkrI GCNGC 2 cut(s) 439, 456
Psp1406I AACGTT 1 cut(s) 147
PspN4I GGNNCC 3 cut(s) 352, 474, 523
PspPI GGNCC 1 cut(s) 216
PstI CTGCAG 1 cut(s) 459
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 356
SalI GTCGAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 438, 455
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 216
SduI GDGCHC 3 cut(s) 185, 353, 526
SetI ASST 5 cut(s) 150, 218, 263, 306, 344
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 455
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 356
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 2 cut(s) 288, 400
SsiI CCGC 1 cut(s) 440
SspMI CTAG 2 cut(s) 90, 429
TaiI ACGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 202, 257, 531
TasI AATT 2 cut(s) 288, 400
TatI WGTACW 1 cut(s) 360
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 437, 454
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 99, 389
TspGWI ACGGA 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 216
XceI RCATGY 2 cut(s) 367, 516
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 2 cut(s) 90, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.