Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

43713018 .. 43715446

Gene Structure 2429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTGTCTGACAATGATAATATTTATCTCTTCTTTCATGCCTGATTCGTTTTACTTCAACGTACTCCCTTTTTCTGAAGATGTTCGAGAATTTCAATTCCCATCTTTCAATAATTTCCCAGCAGCATGGCAACCAAGTGAACAGCAGCAAGAGGCTGCTGATGATTTTGTGAGGATGTTTGATCTTGCACCATCTGGGAAACAGGAGGTTCTGCCGCCTGACCTAACACCAAATCCTGTTCTTGAGCGGTTTTTTCGTCATCTTGAGTTAAAGTCAAGGGACCCAGATGCAGCTGTACCTCCAATTGATGAAACTCTCAGGAAGATTAGTGAACCAGATAAGGAGCTGATTGCTGAAAACAAGTCTGTTATTGATGCATTCCGTAGTCGTTTTGAACTCAAAGAGAACCCAAAGCTGAAGAAATCAAGTAGGCGACTGTTGAAAGAAAAACCATCTGTGTCCGATGAAAGAGAGGATCCTATGGACATTTCTGATCAAACCAACTCCAACGAACATACATCTGGAATTAAGGTTACAAAAATTGGGGATTCTGCTCCTGTCCAGGATTTTGAAGCTATGATGTCCCGTAGAGATAGCCCAGAATGGGTTGGGAAAGCCATCAAGGATATGAAGAACAAAATACACGACTTAGTAGAGGACTCTCACGAAGGGGATAACTATCCTAAAGCACTGGAATGTTTAGTTGCCCTCCGCAAGGGTTGTATCCTAGAGCAAGAACCAAACCAGTTCAATGATTTTCTGCGGTCTCTATGTAAATTCTGCCAGGAGAAGTACCTGAGCAGTTTCTGTGAATTTCTTGCAACCAAAGAACTCACCTTGATTCCCAAGACAGAAGCTATAGACAGTGAAGTAACAGATGCTGAAGCTAGAAGTTTTCTGGTCAAATCAGAGCCAAAGTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0015074 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N Ku_PK_bind

Protein Analysis

308

Amino Acids

35.37

Weight (kDa)

4.88

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ku_C	PF03730	72 - 150	4.6e-08	Ku70/Ku80 C-terminal arm
Ku_PK_bind	PF08785	186 - 300	1.4e-38	Ku C terminal domain like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	247
AciI	CCGC	4 cut(s)	215, 247, 712, 763
AclWI	GGATC	2 cut(s)	470, 483
AcsI	RAATTY	3 cut(s)	89, 776, 812
AcuI	CTGAAG	3 cut(s)	96, 437, 903
AfaI	GTAC	3 cut(s)	63, 297, 794
AfiI	CCNNNNNNNGG	2 cut(s)	604, 715
AgsI	TTSAA	7 cut(s)	58, 95, 109, 395, 442, 572, 751
AjnI	CCWGG	2 cut(s)	561, 783
AluBI	AGCT	6 cut(s)	293, 346, 415, 575, 857, 887
AluI	AGCT	6 cut(s)	293, 346, 415, 575, 857, 887
Alw26I	GTCTC	1 cut(s)	771
AlwI	GGATC	2 cut(s)	470, 483
AlwNI	CAGNNNCTG	2 cut(s)	807, 881
ApeKI	GCWGC	4 cut(s)	122, 145, 155, 290
ApoI	RAATTY	3 cut(s)	89, 776, 812
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	826
AvaII	GGWCC	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	475
BbvI	GCAGC	4 cut(s)	134, 142, 157, 302
BccI	CCATC	4 cut(s)	109, 199, 460, 626
BciT130I	CCWGG	2 cut(s)	563, 785
BciVI	GTATCC	1 cut(s)	734
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	771
BfaI	CTAG	2 cut(s)	728, 888
BfmI	CTRYAG	1 cut(s)	858
BfuI	GTATCC	1 cut(s)	734
BisI	GCNGC	5 cut(s)	123, 146, 156, 215, 291
BlsI	GCNGC	5 cut(s)	124, 147, 157, 216, 292
Bme1390I	CCNGG	2 cut(s)	563, 785
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	3 cut(s)	281, 282, 477
BmrFI	CCNGG	2 cut(s)	563, 785
BmsI	GCATC	3 cut(s)	277, 364, 868
Bpu10I	CCTNAGC	1 cut(s)	797
BpuEI	CTTGAG	2 cut(s)	263, 284
BsaBI	GATNNNNATC	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	771
Bsc4I	CCNNNNNNNGG	2 cut(s)	604, 715
Bse1I	ACTGG	2 cut(s)	696, 745
Bse8I	GATNNNNATC	1 cut(s)	678
BseBI	CCWGG	2 cut(s)	563, 785
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	2 cut(s)	604, 715
BseMII	CTCAG	2 cut(s)	331, 788
BseNI	ACTGG	2 cut(s)	696, 745
BseXI	GCAGC	4 cut(s)	134, 142, 157, 302
BseYI	CCCAGC	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	293, 568
BslI	CCNNNNNNNGG	2 cut(s)	604, 715
BsmAI	GTCTC	1 cut(s)	771
BsmFI	GGGAC	2 cut(s)	293, 568
BsmI	GAATGC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	771
Bsp143I	GATC	3 cut(s)	181, 475, 493
BspACI	CCGC	4 cut(s)	215, 247, 712, 763
BspCNI	CTCAG	2 cut(s)	330, 789
BspLI	GGNNCC	3 cut(s)	281, 282, 477
BspPI	GGATC	2 cut(s)	470, 483
BspTNI	GGTCTC	1 cut(s)	771
BsrBI	CCGCTC	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	696, 745
BssMI	GATC	3 cut(s)	181, 475, 493
Bst2UI	CCWGG	2 cut(s)	563, 785
Bst4CI	ACNGT	2 cut(s)	438, 866
Bst6I	CTCTTC	1 cut(s)	34
BstDEI	CTNAG	3 cut(s)	317, 649, 797
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	3 cut(s)	184, 478, 496
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	3 cut(s)	181, 475, 493
BstNI	CCWGG	2 cut(s)	563, 785
BstSCI	CCNGG	2 cut(s)	561, 783
BstSFI	CTRYAG	1 cut(s)	858
BstV1I	GCAGC	4 cut(s)	134, 142, 157, 302
BstX2I	RGATCY	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	475
BsuI	GTATCC	1 cut(s)	734
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	689, 871
CaiI	CAGNNNCTG	2 cut(s)	807, 881
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	3 cut(s)	62, 296, 793
CviAII	CATG	2 cut(s)	37, 126
CviQI	GTAC	3 cut(s)	62, 296, 793
DdeI	CTNAG	3 cut(s)	317, 649, 797
DpnI	GATC	3 cut(s)	183, 477, 495
DpnII	GATC	3 cut(s)	181, 475, 493
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	771
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	3 cut(s)	96, 437, 903
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	561, 783
EcoT22I	ATGCAT	1 cut(s)	379
FaeI	CATG	2 cut(s)	40, 129
FaiI	YATR	8 cut(s)	38, 127, 482, 516, 578, 629, 772, 860
FaqI	GGGAC	2 cut(s)	293, 568
FatI	CATG	2 cut(s)	36, 125
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	123, 146, 156, 215, 291
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	5 cut(s)	123, 146, 156, 215, 291
FspBI	CTAG	2 cut(s)	728, 888
GluI	GCNGC	5 cut(s)	123, 146, 156, 215, 291
GsaI	CCCAGC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	40, 129
HinfI	GANTC	4 cut(s)	44, 548, 659, 841
HphI	GGTGA	1 cut(s)	826
Hpy166II	GTNNAC	2 cut(s)	140, 332
Hpy188I	TCNGA	5 cut(s)	9, 76, 463, 493, 910
Hpy188III	TCNNGA	6 cut(s)	86, 242, 263, 319, 522, 665
Hpy8I	GTNNAC	2 cut(s)	140, 332
HpyAV	CCTTC	1 cut(s)	662
HpyCH4III	ACNGT	2 cut(s)	438, 866
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	188, 290, 377, 821
HpyF3I	CTNAG	3 cut(s)	317, 649, 797
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	40, 129
KflI	GGGWCCC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	181, 475, 493
LmnI	GCTCC	2 cut(s)	343, 559
Lsp1109I	GCAGC	4 cut(s)	134, 142, 157, 302
LweI	GCATC	3 cut(s)	277, 364, 868
MaeI	CTAG	2 cut(s)	728, 888
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	532, 871
MalI	GATC	3 cut(s)	183, 477, 495
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	3 cut(s)	181, 475, 493
MboII	GAAGA	5 cut(s)	21, 89, 334, 430, 643
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	475
MluCI	AATT	8 cut(s)	89, 95, 112, 303, 525, 540, 776, 812
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	2 cut(s)	531, 900
MnlI	CCTC	7 cut(s)	145, 165, 199, 309, 466, 649, 719
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	2 cut(s)	269, 528
MslI	CAYNNNNRTG	1 cut(s)	694
MspA1I	CMGCKG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	563, 785
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	2 cut(s)	563, 785
NdeII	GATC	3 cut(s)	181, 475, 493
NlaIII	CATG	2 cut(s)	40, 129
NlaIV	GGNNCC	3 cut(s)	281, 282, 477
NsiI	ATGCAT	1 cut(s)	379
PctI	GAATGC	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	44, 548, 841
PfoI	TCCNGGA	1 cut(s)	561
PkrI	GCNGC	5 cut(s)	124, 147, 157, 216, 292
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	561, 783
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	2 cut(s)	561, 783
PspN4I	GGNNCC	3 cut(s)	281, 282, 477
PspPI	GGNCC	1 cut(s)	280
PspPPI	RGGWCCY	1 cut(s)	280
PstNI	CAGNNNCTG	2 cut(s)	807, 881
PsuI	RGATCY	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	63, 297, 794
RsaNI	GTAC	3 cut(s)	62, 296, 793
RseI	CAYNNNNRTG	1 cut(s)	694
SaqAI	TTAA	2 cut(s)	269, 528
SatI	GCNGC	5 cut(s)	123, 146, 156, 215, 291
Sau3AI	GATC	3 cut(s)	181, 475, 493
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	563, 785
SfaNI	GCATC	3 cut(s)	277, 364, 868
SfcI	CTRYAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	694
SmlI	CTYRAG	2 cut(s)	242, 263
SmoI	CTYRAG	2 cut(s)	242, 263
Sse9I	AATT	8 cut(s)	89, 95, 112, 303, 525, 540, 776, 812
SsiI	CCGC	4 cut(s)	215, 247, 712, 763
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	2 cut(s)	728, 888
StyD4I	CCNGG	2 cut(s)	561, 783
TaaI	ACNGT	2 cut(s)	438, 866
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	85
TasI	AATT	8 cut(s)	89, 95, 112, 303, 525, 540, 776, 812
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	3 cut(s)	44, 548, 841
Tru1I	TTAA	2 cut(s)	269, 528
Tru9I	TTAA	2 cut(s)	269, 528
TscAI	CASTG	2 cut(s)	696, 871
TseI	GCWGC	4 cut(s)	122, 145, 155, 290
TspDTI	ATGAA	4 cut(s)	25, 324, 480, 644
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	2 cut(s)	696, 871
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	713
XapI	RAATTY	3 cut(s)	89, 776, 812
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	2 cut(s)	728, 888
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.