RchiOBHm_Chr1g0350641

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
43763930 .. 43765523
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
ATGTACACATATATAGCAGTGAGATACTGCTGTTACAATGCAACCATTAAACTCTATTTACAGCTACAATCAAAACTGTTATGCAATTATAGCAGAATCAAAACAGCCTATGTATTCAATGGAGGAGAATCATATGGCTGGAGTTTAGGAGAAGATTTAGTGTCTCTAACATTATGTTACACAAATGAGCACACATTATGTTTCACAGATCTCAATTGTCTTTATGTGGATTACAAATTCAACCCTACAACTGAGACATTAGATATAATGCACGGCAGAGAACATTTTATGTCTAATCTCTACTTGTTGCTACAGTGGTCTCAATATTCAACAGAGGCTGAGCTACTGAAACAATTTAATGACATTGGAGCTCATGGGACAGAAGTTATGATTTATAACTTATGGTTCAACGATGATGGGAGTGCAGAGCTGGACTTTGATACTGATCCCGAGGGTCAAGTTATTACTACTATTGGATTTCTAAACGATGCTCCATATGTCAGTTACCACGGTTTCAATCTTTATCACAAGAATCGTCTGATACTGGTATCTTTTCCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

187

Amino Acids

21.72

Weight (kDa)

4.74

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Morc6_S5 PF17942 148 - 182 2.3e-08 Morc6 ribosomal protein S5 domain 2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AclWI GGATC 1 cut(s) 440
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 5 cut(s) 118, 241, 330, 409, 517
AluBI AGCT 4 cut(s) 64, 343, 371, 430
AluI AGCT 4 cut(s) 64, 343, 371, 430
Alw21I GWGCWC 2 cut(s) 192, 373
Alw26I GTCTC 3 cut(s) 168, 248, 324
AlwI GGATC 1 cut(s) 440
AlwNI CAGNNNCTG 1 cut(s) 338
Ama87I CYCGRG 1 cut(s) 449
ApoI RAATTY 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 449
BaeI ACNNNNGTAYC 2 cut(s) 16, 49
BanII GRGCYC 1 cut(s) 373
Bbv12I GWGCWC 2 cut(s) 192, 373
BccI CCATC 1 cut(s) 410
BceAI ACGGC 1 cut(s) 289
BcoDI GTCTC 3 cut(s) 168, 248, 324
BfmI CTRYAG 1 cut(s) 311
BglII AGATCT 1 cut(s) 208
BlpI GCTNAGC 1 cut(s) 339
BmeT110I CYCGRG 1 cut(s) 449
BmsI GCATC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 160
Bpu1102I GCTNAGC 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 450, 508
Bse1I ACTGG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 450, 508
BseJI GATNNNNATC 1 cut(s) 444
BseMII CTCAG 2 cut(s) 243, 330
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 444
BsiHKAI GWGCWC 2 cut(s) 192, 373
BsiHKCI CYCGRG 1 cut(s) 449
BslFI GGGAC 1 cut(s) 391
BsmAI GTCTC 3 cut(s) 168, 248, 324
BsmFI GGGAC 1 cut(s) 391
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 192, 373
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 208, 445
Bsp1720I GCTNAGC 1 cut(s) 339
BspCNI CTCAG 2 cut(s) 244, 331
BspPI GGATC 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 2 cut(s) 450, 508
BssMI GATC 2 cut(s) 208, 445
Bst4CI ACNGT 3 cut(s) 78, 315, 512
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 252, 339
BstDSI CCRYGG 1 cut(s) 508
BstKTI GATC 2 cut(s) 211, 448
BstMAI GTCTC 3 cut(s) 168, 248, 324
BstMBI GATC 2 cut(s) 208, 445
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 24, 320
CaiI CAGNNNCTG 1 cut(s) 338
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 374
CviJI RGCY 7 cut(s) 64, 107, 138, 338, 343, 371, 430
CviKI_1 RGCY 7 cut(s) 64, 107, 138, 338, 343, 371, 430
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 252, 339
DpnI GATC 2 cut(s) 210, 447
DpnII GATC 2 cut(s) 208, 445
Ecl136II GAGCTC 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 373
FaeI CATG 1 cut(s) 377
FaqI GGGAC 1 cut(s) 391
FatI CATG 1 cut(s) 373
FauNDI CATATG 2 cut(s) 133, 496
FriOI GRGCYC 1 cut(s) 373
GsuI CTGGAG 1 cut(s) 160
Hin1II CATG 1 cut(s) 377
HinfI GANTC 3 cut(s) 96, 128, 532
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 540
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 3 cut(s) 78, 315, 512
HpyCH4V TGCA 4 cut(s) 41, 84, 271, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 252, 339
Hsp92II CATG 1 cut(s) 377
Kzo9I GATC 2 cut(s) 208, 445
LmnI GCTCC 2 cut(s) 368, 496
LpnPI CCDG 3 cut(s) 124, 416, 530
LweI GCATC 1 cut(s) 478
MaeIII GTNAC 3 cut(s) 32, 176, 503
MalI GATC 2 cut(s) 210, 447
MboI GATC 2 cut(s) 208, 445
MboII GAAGA 1 cut(s) 164
MfeI CAATTG 1 cut(s) 214
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 2 cut(s) 192, 373
MluCI AATT 4 cut(s) 85, 214, 236, 353
MnlI CCTC 3 cut(s) 116, 328, 445
MseI TTAA 2 cut(s) 48, 357
MunI CAATTG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeI CATATG 2 cut(s) 133, 496
NdeII GATC 2 cut(s) 208, 445
NlaIII CATG 1 cut(s) 377
PfeI GAWTC 3 cut(s) 96, 128, 532
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 373
SaqAI TTAA 2 cut(s) 48, 357
Sau3AI GATC 2 cut(s) 208, 445
SduI GDGCHC 2 cut(s) 192, 373
SetI ASST 4 cut(s) 66, 345, 373, 432
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 311
Sse9I AATT 4 cut(s) 85, 214, 236, 353
SspI AATATT 1 cut(s) 326
SstI GAGCTC 1 cut(s) 373
TaaI ACNGT 3 cut(s) 78, 315, 512
TasI AATT 4 cut(s) 85, 214, 236, 353
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 3 cut(s) 96, 128, 532
Tru1I TTAA 2 cut(s) 48, 357
Tru9I TTAA 2 cut(s) 48, 357
TscAI CASTG 2 cut(s) 24, 320
TspRI CASTG 2 cut(s) 24, 320
XapI RAATTY 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.