Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

46089359 .. 46090958

Gene Structure 1600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTGCAGAATACTATATGGTGCAAAAATGTCAAGTTCTACTGAGAAATATATTGAAATATGTATATATGAATCATGCTTTAGTTTGTTTGTTCCAAACATCTTCATCAATTGGCATTGGACACTATCCAATTCCTTGTTAGTATTGAATCCGATAAAGGCATGCCACCGTTATGCTTCATGCTTGGACTACCTTGAGAATCTCAAAGCTAACTTGTTGCTGGACATCCATTTGCATGACCACCTTGAAACACTCTATGACCAGATCCGCAACAAGGCCCTTATACAGTACACACACCCCTTTGTGTCTGTAGATCTAAACATGATGGCCAATGCTTTCAAAACTGATGTTGCTGGGCTGGAGAAAGAACTTGAAGCTTTGATCACCGACAACCAAGTTCAGGCTCGTATAGACTCTCACAATAAAATTCTATATGCACGGCATGCGGATCAAAGGAATGCAACTTTCCAGCGGGCCCTACAGACAGGGAATGAGTTTGATCGGGATGTGAAGTCGATGCTGCTCAGGGTAAATCTTATCAAGCACGAAATCAATCTTAAGCAATCAAAGAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000338 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

192

Amino Acids

22.33

Weight (kDa)

7.7

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	66 - 147	2.4e-18	PCI domain
CSN1_C	PF21151	151 - 176	3.6e-10	COP9 signalosome complex subunit 1, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	268, 446, 472
AclWI	GGATC	2 cut(s)	259, 456
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	274, 400
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	5 cut(s)	56, 148, 248, 340, 374
AluBI	AGCT	2 cut(s)	209, 377
AluI	AGCT	2 cut(s)	209, 377
AlwI	GGATC	2 cut(s)	259, 456
AoxI	GGCC	3 cut(s)	276, 327, 474
ApaI	GGGCCC	1 cut(s)	478
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	1 cut(s)	426
AspS9I	GGNCC	3 cut(s)	277, 474, 475
AsuHPI	GGTGA	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	478
BalI	TGGCCA	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	507
BccI	CCATC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	455
BclI	TGATCA	1 cut(s)	381
BfmI	CTRYAG	2 cut(s)	309, 479
BfrI	CTTAAG	1 cut(s)	557
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	522
BmgT120I	GGNCC	3 cut(s)	277, 474, 475
BmiI	GGNNCC	1 cut(s)	476
BmsI	GCATC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 400
BseGI	GGATG	2 cut(s)	225, 511
BseLI	CCNNNNNNNGG	2 cut(s)	274, 400
BseMII	CTCAG	2 cut(s)	33, 538
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	1 cut(s)	507
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	278, 329, 476
BslI	CCNNNNNNNGG	2 cut(s)	274, 400
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	3 cut(s)	278, 329, 476
Bsp120I	GGGCCC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	5 cut(s)	264, 313, 381, 448, 499
BspACI	CCGC	3 cut(s)	268, 446, 472
BspANI	GGCC	3 cut(s)	278, 329, 476
BspCNI	CTCAG	2 cut(s)	34, 537
BspLI	GGNNCC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	259, 456
BspTI	CTTAAG	1 cut(s)	557
BssMI	GATC	5 cut(s)	264, 313, 381, 448, 499
Bst4CI	ACNGT	2 cut(s)	170, 288
BstAFI	CTTAAG	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	163, 444, 474
BstDEI	CTNAG	2 cut(s)	42, 524
BstF5I	GGATG	2 cut(s)	225, 511
BstKTI	GATC	5 cut(s)	267, 316, 384, 451, 502
BstMBI	GATC	5 cut(s)	264, 313, 381, 448, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNSI	RCATGY	2 cut(s)	165, 446
BstSFI	CTRYAG	2 cut(s)	309, 479
BstSLI	GKGCMC	1 cut(s)	478
BstV1I	GCAGC	1 cut(s)	507
BstX2I	RGATCY	2 cut(s)	264, 313
BstYI	RGATCY	2 cut(s)	264, 313
BsuRI	GGCC	3 cut(s)	278, 329, 476
BtsCI	GGATG	2 cut(s)	225, 511
Cac8I	GCNNGC	3 cut(s)	163, 444, 474
Cfr13I	GGNCC	3 cut(s)	277, 474, 475
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	6 cut(s)	75, 162, 180, 236, 322, 443
CviJI	RGCY	7 cut(s)	209, 278, 329, 358, 377, 404, 476
CviKI_1	RGCY	7 cut(s)	209, 278, 329, 358, 377, 404, 476
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	42, 524
DpnI	GATC	5 cut(s)	266, 315, 383, 450, 501
DpnII	GATC	5 cut(s)	264, 313, 381, 448, 499
EaeI	YGGCCR	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	478
EcoO109I	RGGNCCY	2 cut(s)	277, 475
EcoT38I	GRGCYC	1 cut(s)	478
FaeI	CATG	6 cut(s)	78, 165, 183, 239, 325, 446
FatI	CATG	6 cut(s)	74, 161, 179, 235, 321, 442
FauI	CCCGC	1 cut(s)	465
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	521
FokI	GGATG	2 cut(s)	212, 518
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	1 cut(s)	521
GluI	GCNGC	1 cut(s)	521
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	3 cut(s)	278, 329, 476
Hin1II	CATG	6 cut(s)	78, 165, 183, 239, 325, 446
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	4 cut(s)	71, 148, 199, 413
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	2 cut(s)	503, 576
Hpy8I	GTNNAC	1 cut(s)	291
HpyCH4III	ACNGT	2 cut(s)	170, 288
HpyCH4V	TGCA	5 cut(s)	6, 23, 235, 437, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	2 cut(s)	42, 524
Hsp92II	CATG	6 cut(s)	78, 165, 183, 239, 325, 446
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	5 cut(s)	264, 313, 381, 448, 499
LpnPI	CCDG	8 cut(s)	206, 275, 339, 344, 386, 471, 482, 511
Lsp1109I	GCAGC	1 cut(s)	507
LweI	GCATC	1 cut(s)	507
MalI	GATC	5 cut(s)	266, 315, 383, 450, 501
MboI	GATC	5 cut(s)	264, 313, 381, 448, 499
MboII	GAAGA	1 cut(s)	94
MfeI	CAATTG	1 cut(s)	109
MflI	RGATCY	2 cut(s)	264, 313
MhlI	GDGCHC	1 cut(s)	478
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	3 cut(s)	109, 130, 426
MluNI	TGGCCA	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	407
Mox20I	TGGCCA	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	2 cut(s)	171, 234
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	472
MspCI	CTTAAG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	5 cut(s)	264, 313, 381, 448, 499
NlaIII	CATG	6 cut(s)	78, 165, 183, 239, 325, 446
NlaIV	GGNNCC	1 cut(s)	476
NspI	RCATGY	2 cut(s)	165, 446
PaeI	GCATGC	2 cut(s)	165, 446
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	71, 148, 199
PkrI	GCNGC	1 cut(s)	522
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	476
PspOMI	GGGCCC	1 cut(s)	474
PspPI	GGNCC	3 cut(s)	277, 474, 475
PsuI	RGATCY	2 cut(s)	264, 313
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	171, 234
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	1 cut(s)	521
Sau3AI	GATC	5 cut(s)	264, 313, 381, 448, 499
Sau96I	GGNCC	3 cut(s)	277, 474, 475
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	478
SetI	ASST	4 cut(s)	195, 211, 246, 379
SfaNI	GCATC	1 cut(s)	507
SfcI	CTRYAG	2 cut(s)	309, 479
SmiMI	CAYNNNNRTG	2 cut(s)	171, 234
SmlI	CTYRAG	2 cut(s)	194, 557
SmoI	CTYRAG	2 cut(s)	194, 557
SphI	GCATGC	2 cut(s)	165, 446
Sse9I	AATT	3 cut(s)	109, 130, 426
SsiI	CCGC	3 cut(s)	268, 446, 472
TaaI	ACNGT	2 cut(s)	170, 288
TaqI	TCGA	1 cut(s)	515
TasI	AATT	3 cut(s)	109, 130, 426
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	3 cut(s)	71, 148, 199
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TseI	GCWGC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	84, 94, 168
Vha464I	CTTAAG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	2 cut(s)	165, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.