RchiOBHm_Chr1g0353551

protein modification by small protein conjugation or removal

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
46750059 .. 46750498
440 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGAACATCGGTGTCCATTTCTGGTCTCTTATATATCTCTGCTTTCCTTGGTCTGGTTGGGATATCATCTGGATCAAATGGCTGTGCTGCATCTTCATCACGCTCATCTTCAACAATCATATTGTGCAAGATAATGCACGTCATCATGATGTATTGAAGGTTCTCCTTACTCCACCCACGAGCTGGTCCTCTTATGATTGCCCAACGAGCTTGGAGAATACCAAATGCTCTCTCCACGTCTTTTCTGTATGCTTCCTGCATCCTTGTGAAATGTTGTGTCTGCGGCGACCTCGGGTTTCGGATTGTTTGTACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

12.43

Weight (kDa)

7.58

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 183
AciI CCGC 1 cut(s) 283
AclWI GGATC 1 cut(s) 80
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 53, 183
AgsI TTSAA 2 cut(s) 112, 157
AjiI CACGTC 2 cut(s) 140, 238
AluBI AGCT 2 cut(s) 183, 210
AluI AGCT 2 cut(s) 183, 210
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 186
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 1 cut(s) 186
BauI CACGAG 1 cut(s) 178
BbvI GCAGC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 30
BisI GCNGC 2 cut(s) 88, 284
BlsI GCNGC 2 cut(s) 89, 285
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 291
BmgBI CACGTC 2 cut(s) 140, 238
BmgT120I GGNCC 1 cut(s) 186
BmsI GCATC 2 cut(s) 99, 268
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 47, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 183
BseDI CCNNGG 2 cut(s) 47, 290
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 53, 183
BseXI GCAGC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 53, 183
BsmAI GTCTC 1 cut(s) 30
Bso31I GGTCTC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 1 cut(s) 283
BspHI TCATGA 1 cut(s) 145
BspPI GGATC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 309
BssECI CCNNGG 2 cut(s) 47, 290
BssMI GATC 1 cut(s) 72
BssSI CACGAG 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 178
BstAUI TGTACA 1 cut(s) 309
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 74
BtrI CACGTC 2 cut(s) 140, 238
BtsCI GGATG 1 cut(s) 259
CciI TCATGA 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 146
CviJI RGCY 3 cut(s) 82, 183, 210
CviKI_1 RGCY 3 cut(s) 82, 183, 210
CviQI GTAC 1 cut(s) 310
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 47
Eco31I GGTCTC 1 cut(s) 30
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 291
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 1 cut(s) 149
FaiI YATR 6 cut(s) 32, 34, 120, 147, 195, 250
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 88, 284
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 88, 284
GluI GCNGC 2 cut(s) 88, 284
Hin1II CATG 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 2 cut(s) 70, 146
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 2 cut(s) 139, 237
HpyCH4V TGCA 4 cut(s) 90, 127, 137, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpySE526I ACGT 2 cut(s) 139, 237
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 72
LpnPI CCDG 5 cut(s) 7, 39, 55, 169, 269
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 2 cut(s) 99, 268
MaeII ACGT 2 cut(s) 139, 237
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 2 cut(s) 85, 100
MnlI CCTC 2 cut(s) 199, 300
MslI CAYNNNNRTG 2 cut(s) 147, 264
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 149
PagI TCATGA 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 2 cut(s) 89, 285
PspPI GGNCC 1 cut(s) 186
PsrI GAACNNNNNNTAC 2 cut(s) 144, 176
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 2 cut(s) 147, 264
SatI GCNGC 2 cut(s) 88, 284
Sau3AI GATC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 186
SetI ASST 6 cut(s) 142, 162, 185, 212, 240, 292
SfaNI GCATC 2 cut(s) 99, 268
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 147, 264
SsiI CCGC 1 cut(s) 283
StyI CCWWGG 1 cut(s) 47
TaiI ACGT 2 cut(s) 142, 240
TatI WGTACW 1 cut(s) 309
TauI GCSGC 1 cut(s) 286
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 17, 85
Van91I CCANNNNNTGG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.