Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

47296475 .. 47296972

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTGGAATGAGGACCTGATGTTTGTTGCTGCTGAACCCTTTGATGACCATCTGATCATTTCAGTTGAAGATCGTGTTGGTTCAAACAAAGATGAGACCTTAGGAAGGGTTGTCATACCATTGAACACTGTTGAGAGGCGTGCTGATGATCGAAATATTCGTGGGCGGTGGTATAACCTTGAAAAGCACATGTCAGATGCCATGGAGCTGGAGGGAGAGCAGCGGAAGAAAGATAAAGAAAGAGATAAGTTTTCCAGCAGAATCCATCTTCGTATTTGTCTTGATGGAGGGTATCATGTGCTTGATGAGTCTACTCACTATAGTAGTGACCTTCGACCTACAGCTAAGCCGCTTTGGAAGTCATCCATTGGTGTCTTGGAGCTCGGAATTCTAATGCTAATGGTCTACACCAATGAAAACAAGGATGGGAAGGGTACATCAGATACATATTGTGTAGCAAAGATGGGCACAAATGGGTTCGTACTCGACCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

165

Amino Acids

18.97

Weight (kDa)

5.69

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	1 - 60	1.6e-07	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	311, 405
AciI	CCGC	3 cut(s)	166, 223, 350
AcsI	RAATTY	1 cut(s)	387
AfaI	GTAC	2 cut(s)	436, 483
AfiI	CCNNNNNNNGG	1 cut(s)	105
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	4 cut(s)	68, 84, 124, 182
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	3 cut(s)	208, 344, 382
AluI	AGCT	3 cut(s)	208, 344, 382
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	29, 220
ApoI	RAATTY	1 cut(s)	387
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	13
AxyI	CCTNAGG	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	16, 232
BccI	CCATC	5 cut(s)	57, 273, 278, 419, 457
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	89
BfmI	CTRYAG	2 cut(s)	319, 339
BisI	GCNGC	3 cut(s)	30, 221, 350
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	3 cut(s)	31, 222, 351
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmsI	GCATC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	345
BsaBI	GATNNNNATC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse21I	CCTNAGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	362, 430
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	16, 232
BsiHKAI	GWGCWC	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	384, 470
Bsp143I	GATC	3 cut(s)	54, 70, 148
Bsp1720I	GCTNAGC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	3 cut(s)	166, 223, 350
BspTNI	GGTCTC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	54, 70, 148
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	100, 345
BstDSI	CCRYGG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	362, 430
BstKTI	GATC	3 cut(s)	57, 73, 151
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	54, 70, 148
BstNSI	RCATGY	1 cut(s)	193
BstSFI	CTRYAG	2 cut(s)	319, 339
BstSLI	GKGCMC	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	16, 232
BstXI	CCANNNNNNTGG	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	100
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	362, 430
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	435, 482
CviAII	CATG	3 cut(s)	190, 202, 296
CviJI	RGCY	4 cut(s)	208, 344, 349, 382
CviKI_1	RGCY	4 cut(s)	208, 344, 349, 382
CviQI	GTAC	2 cut(s)	435, 482
DdeI	CTNAG	2 cut(s)	100, 345
DpnI	GATC	3 cut(s)	56, 72, 150
DpnII	GATC	3 cut(s)	54, 70, 148
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	382
Eco81I	CCTNAGG	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	382
EcoNI	CCTNNNNNAGG	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	193, 205, 299
FaiI	YATR	8 cut(s)	116, 174, 191, 203, 297, 321, 448, 492
FatI	CATG	3 cut(s)	189, 201, 295
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	2 cut(s)	311, 405
Fnu4HI	GCNGC	3 cut(s)	30, 221, 350
FokI	GGATG	2 cut(s)	349, 437
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	3 cut(s)	30, 221, 350
GluI	GCNGC	3 cut(s)	30, 221, 350
GsuI	CTGGAG	1 cut(s)	230
Hin1II	CATG	3 cut(s)	193, 205, 299
HinfI	GANTC	2 cut(s)	261, 308
Hpy166II	GTNNAC	2 cut(s)	312, 406
Hpy188I	TCNGA	4 cut(s)	54, 196, 386, 442
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	312, 406
HpyAV	CCTTC	3 cut(s)	99, 341, 424
HpyCH4III	ACNGT	1 cut(s)	130
HpyF3I	CTNAG	2 cut(s)	100, 345
Hsp92II	CATG	3 cut(s)	193, 205, 299
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	54, 70, 148
LmnI	GCTCC	2 cut(s)	205, 379
LpnPI	CCDG	3 cut(s)	29, 194, 268
Lsp1109I	GCAGC	2 cut(s)	16, 232
LweI	GCATC	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	3 cut(s)	56, 72, 150
MboI	GATC	3 cut(s)	54, 70, 148
MboII	GAAGA	3 cut(s)	80, 238, 260
MhlI	GDGCHC	2 cut(s)	384, 470
MluCI	AATT	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	4 cut(s)	4, 129, 205, 281
MspA1I	CMGCKG	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	54, 70, 148
NlaIII	CATG	3 cut(s)	193, 205, 299
NmuCI	GTSAC	1 cut(s)	326
NspI	RCATGY	1 cut(s)	193
PciI	ACATGT	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	31, 222, 351
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	13
PscI	ACATGT	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	13
PspPPI	RGGWCCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	436, 483
RsaNI	GTAC	2 cut(s)	435, 482
SacI	GAGCTC	1 cut(s)	384
SatI	GCNGC	3 cut(s)	30, 221, 350
Sau3AI	GATC	3 cut(s)	54, 70, 148
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	384, 470
SetI	ASST	8 cut(s)	18, 101, 180, 210, 333, 340, 346, 384
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	2 cut(s)	319, 339
SinI	GGWCC	1 cut(s)	13
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	3 cut(s)	166, 223, 350
SspI	AATATT	1 cut(s)	157
SstI	GAGCTC	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	3 cut(s)	151, 334, 486
TasI	AATT	1 cut(s)	387
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	261
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	29, 220
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	429
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	13
XagI	CCTNNNNNAGG	1 cut(s)	103
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	2 cut(s)	311, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.