RchiOBHm_Chr1g0354561

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
47481944 .. 47482354
411 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGCCCCCTCCGGGACAATGCAACACGGAGGACGACTCTGACTGCTGTAAAGCCAGAAAAATGTACCCAACATACATGTGTTCACCACCAATGTCCGATAACACGCAGGCATACCTGACTCTCAACAGCTTTAAGGCAGGTGGTGACGGGGGAGGCCCATCTGAATGCAATGGCAAGTACCACAATGACAACACTCCAATTGTGACATCATCCACTGGATGGTACAATGGTGGATCAAGGTGCCTTAAGAACATCGGAATTAACGGTAATGGGCAGAGTGTGGTGGCCATGGTGGTGGATGAGTGTGACCCTACTGAAGGATGTGATGCAGACCATGATTACCAACCTCCTTGTCCTAACAATATTGTTGAAGCCTCCAAAGGCCGTTTGGAAAGCCTTAGGTGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.55

Weight (kDa)

4.59

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 5 - 128 5.4e-49 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 128
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 240
AccB7I CCANNNNNTGG 1 cut(s) 219
AclWI GGATC 1 cut(s) 241
AcoI YGGCCR 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 3 cut(s) 65, 179, 224
AfiI CCNNNNNNNGG 3 cut(s) 11, 219, 317
AflII CTTAAG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 1 cut(s) 371
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
AlwI GGATC 1 cut(s) 241
AoxI GGCC 3 cut(s) 154, 285, 382
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 75, 155
AxyI CCTNAGG 1 cut(s) 398
BaeI ACNNNNGTAYC 2 cut(s) 214, 247
BalI TGGCCA 1 cut(s) 287
BanI GGYRCC 1 cut(s) 240
BccI CCATC 2 cut(s) 166, 213
BceAI ACGGC 1 cut(s) 369
BcnI CCSGG 1 cut(s) 12
BfrI CTTAAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 316
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpuMI CCSGG 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 219, 317
Bse1I ACTGG 1 cut(s) 220
Bse21I CCTNAGG 1 cut(s) 398
Bse3DI GCAATG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 4 cut(s) 209, 224, 304, 326
BseLI CCNNNNNNNGG 3 cut(s) 11, 219, 317
BseMI GCAATG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 220
BshFI GGCC 3 cut(s) 156, 287, 384
BshNI GGYRCC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 3 cut(s) 11, 219, 317
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 3 cut(s) 156, 287, 384
Bsp143I GATC 1 cut(s) 233
Bsp19I CCATGG 1 cut(s) 288
BspANI GGCC 3 cut(s) 156, 287, 384
BspLI GGNNCC 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 241
BspT107I GGYRCC 1 cut(s) 240
BspTI CTTAAG 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 175
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 398
BstDSI CCRYGG 1 cut(s) 288
BstENI CCTNNNNNAGG 1 cut(s) 315
BstF5I GGATG 4 cut(s) 209, 224, 304, 326
BstKTI GATC 1 cut(s) 236
BstMBI GATC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 295
Bsu36I CCTNAGG 1 cut(s) 398
BsuRI GGCC 3 cut(s) 156, 287, 384
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 4 cut(s) 209, 224, 304, 326
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 3 cut(s) 64, 178, 223
CviAII CATG 3 cut(s) 76, 289, 335
CviJI RGCY 7 cut(s) 53, 129, 156, 287, 374, 384, 396
CviKI_1 RGCY 7 cut(s) 53, 129, 156, 287, 374, 384, 396
CviQI GTAC 3 cut(s) 64, 178, 223
DdeI CTNAG 1 cut(s) 398
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 3 cut(s) 79, 292, 338
FaiI YATR 5 cut(s) 73, 77, 112, 290, 336
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 75, 288, 334
FokI GGATG 4 cut(s) 196, 231, 311, 333
HaeIII GGCC 3 cut(s) 156, 287, 384
HapII CCGG 1 cut(s) 11
Hin1II CATG 3 cut(s) 79, 292, 338
HinfI GANTC 2 cut(s) 35, 118
HpaII CCGG 1 cut(s) 11
HphI GGTGA 2 cut(s) 75, 155
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 4 cut(s) 40, 97, 163, 257
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 3 cut(s) 21, 168, 329
HpyF3I CTNAG 1 cut(s) 398
Hsp92II CATG 3 cut(s) 79, 292, 338
Kzo9I GATC 1 cut(s) 233
LpnPI CCDG 6 cut(s) 24, 67, 92, 123, 128, 201
LweI GCATC 1 cut(s) 316
MaeIII GTNAC 3 cut(s) 143, 202, 305
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MfeI CAATTG 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 2 cut(s) 198, 258
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 2 cut(s) 29, 112
MnlI CCTC 5 cut(s) 18, 22, 146, 357, 385
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 3 cut(s) 132, 246, 261
MslI CAYNNNNRTG 3 cut(s) 76, 163, 293
Msp20I TGGCCA 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 12
NcoI CCATGG 1 cut(s) 288
NdeII GATC 1 cut(s) 233
NlaIII CATG 3 cut(s) 79, 292, 338
NlaIV GGNNCC 1 cut(s) 242
NmuCI GTSAC 3 cut(s) 143, 202, 305
NspI RCATGY 1 cut(s) 79
PaqCI CACCTGC 1 cut(s) 128
PciI ACATGT 1 cut(s) 75
PctI GAATGC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 219
PfoI TCCNGGA 1 cut(s) 10
PleI GAGTC 2 cut(s) 29, 112
PpsI GAGTC 2 cut(s) 29, 112
PscI ACATGT 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 242
PspPI GGNCC 1 cut(s) 155
RsaI GTAC 3 cut(s) 65, 179, 224
RsaNI GTAC 3 cut(s) 64, 178, 223
RseI CAYNNNNRTG 3 cut(s) 76, 163, 293
SaqAI TTAA 3 cut(s) 132, 246, 261
Sau3AI GATC 1 cut(s) 233
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 2 cut(s) 29, 112
ScrFI CCNGG 1 cut(s) 12
SetI ASST 6 cut(s) 117, 131, 142, 242, 349, 404
SfaNI GCATC 1 cut(s) 316
SmiMI CAYNNNNRTG 3 cut(s) 76, 163, 293
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 198, 258
SspI AATATT 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 266
TasI AATT 2 cut(s) 198, 258
Tru1I TTAA 3 cut(s) 132, 246, 261
Tru9I TTAA 3 cut(s) 132, 246, 261
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 3 cut(s) 143, 202, 305
Tsp45I GTSAC 3 cut(s) 143, 202, 305
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 219
Vha464I CTTAAG 1 cut(s) 245
XagI CCTNNNNNAGG 1 cut(s) 315
XceI RCATGY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.