Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

48101078 .. 48107354

Gene Structure 6277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAGCTATTGAGCATGACAAGCTATTGAAGGATGCTTCTGACGAGTCTTCACATGTGGAAGGTGAAGGTGCCAGTCCTCTAGTGGAGATTAGCACCATGGCAGCAATTCTCTTTGTTGTGATTGCTTCATGCTTCTTGGTTATGTTTTACAAACTTATGTCCTTCTGGTTCATCGAGATTTTGGTGGTTTTGTTTTGCATTGGTGGGATAGAGGGCCTACAGACTTGCTTGGTGGCCTTGCTATCATGTTTCAGACAGTTTAAACGTGCTGGAGAATCATATGTTAAGGTGCCCTTCTCTGGAGCTGTTTCATATTTGACACCAGCTGGTATTGCACTGATAATCACCGTTCTTCAGATTGTTCGCATACCGAATCTCAAGAATCGAAGCTGTGGAGGGAGGGTTGAAGATCTGGGGTTGAGTATCTCGGATCGTTGTGAGCGTGGGTACATTGCTCAAGTTTCCTCAATCTCTCACTCTCACTCTCACACGCTCTCTGACTCACTCACTCTCCCCTCTCTCTCTCTCTCTCTCTCTCTCTATGTACACAGACCCATCCTCTTTCTCTCCTCCATGTCCACGACCACCATATCTCATCCACCTTCTAAACCCATCCCCTTTCTCTTCCTCCATGGCCGCGATCGGAAGCTTACTAGGCCGGAGATAGGCCACCTGCAGAAGGTCGGCGCCATATCTCTCCGCCATCTTCAGAAGGCCCATGACTCTCACTCTCTATCAGACCCTGAAATTTCCATAATGGAAAAGCCCCAAACGAAGAACCCTACCCCAAATCGAAGAATTCCCAGAATTTCTGTCACCGAAATCTCCCCGTCGTTGCTCTGCCTCCATTTCCTCCTCGGCTTTCATATTGGAGAAGAAGACTGCAACGTCATTCGGAGAGTCTCTAGTAAATGTTGGAAGACAAAACATGCCAGGATTAATATAAATGGGATTTTGGGCGATTATGGTGGGCAAGTTCATGAAAAATTCGATGTGGGCGATGGTGGGCAATTTCTACATCAAGAAATTGTTGTCAAAGATGAGATTTTGGGCGACGGAGGTGGGTTAGTTTGCAGTGGTGGTGTGGGGGAGAAATTGGGTCTGAAGAAGATGGGTGTGAGCTACGAGCCATCTAGCTGTGCCCTCTATTTTGTGAGAGAGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCCTCCTTTGGTTCTCGTTTGCTTGATCTGGAACAATTGGTGGCTGTGATGGAGGGCTTTCATATTGGAGAAGAAGACTGCAACGTCATTCGGAGAGTCTCCAGTAAATGTTGGAAGACAAAACATGCCAGGATTAACATAAATGGGATTTTGGGCGACGATGGTGGGCAAGTTCATGGAAAATTCGATGTGGGCGATGGTGGGCAATTTCTACGTCAAGAAATTGTTGTCAAAGATGAGATTTTGGGCGATGGAGGTGGGTTAGTTTGCAGTGGTGGTGTGGCGGAGAAATTGGGTCTGAAGAAGATGGGTGCGAGCTACGAGCCATCTAGCTGTGCCCTCTATTTTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGTGCCCAGAATAAAAGAAGAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

601

Amino Acids

68.02

Weight (kDa)

7.29

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	46 - 122	1.2e-11	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	738
AasI	GACNNNNNNGTC	2 cut(s)	944, 1421
Acc36I	ACCTGC	1 cut(s)	738
Acc65I	GGTACC	1 cut(s)	11
AccB1I	GGYRCC	5 cut(s)	11, 125, 346, 743, 1780
AccII	CGCG	1 cut(s)	696
AciI	CCGC	3 cut(s)	694, 757, 1622
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	5 cut(s)	804, 855, 864, 1043, 1520
AcuI	CTGAAG	4 cut(s)	395, 749, 1181, 1658
AcyI	GRCGYC	1 cut(s)	744
AfaI	GTAC	3 cut(s)	13, 506, 603
AfiI	CCNNNNNNNGG	3 cut(s)	356, 722, 736
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	85, 464
AjnI	CCWGG	2 cut(s)	989, 1466
Alw26I	GTCTC	2 cut(s)	964, 1441
AlwI	GGATC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	800
AoxI	GGCC	6 cut(s)	271, 291, 691, 713, 724, 771
ApeKI	GCWGC	2 cut(s)	59, 158
ApoI	RAATTY	5 cut(s)	804, 855, 864, 1043, 1520
AseI	ATTAAT	1 cut(s)	996
Asp718I	GGTACC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	746
AspS9I	GGNCC	2 cut(s)	271, 772
AsuHPI	GGTGA	3 cut(s)	131, 394, 865
BaeGI	GKGCMC	4 cut(s)	351, 1201, 1678, 1785
BanI	GGYRCC	5 cut(s)	11, 125, 346, 743, 1780
BbsI	GAAGAC	5 cut(s)	96, 942, 983, 1419, 1460
BbvI	GCAGC	2 cut(s)	71, 170
BciT130I	CCWGG	2 cut(s)	991, 1468
BcoDI	GTCTC	2 cut(s)	964, 1441
BfaI	CTAG	5 cut(s)	137, 711, 963, 1191, 1668
BfmI	CTRYAG	2 cut(s)	275, 731
BfoI	RGCGCY	1 cut(s)	747
BfuAI	ACCTGC	1 cut(s)	738
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	3 cut(s)	60, 159, 694
BlsI	GCNGC	3 cut(s)	61, 160, 695
Bme1390I	CCNGG	2 cut(s)	991, 1468
BmgT120I	GGNCC	2 cut(s)	271, 772
BmiI	GGNNCC	5 cut(s)	13, 127, 348, 745, 1782
BmrFI	CCNGG	2 cut(s)	991, 1468
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	5 cut(s)	96, 942, 983, 1419, 1460
BpmI	CTGGAG	3 cut(s)	348, 378, 1423
BpuEI	CTTGAG	2 cut(s)	419, 498
BsaHI	GRCGYC	1 cut(s)	744
BsaJI	CCNNGG	3 cut(s)	153, 688, 913
BsaXI	ACNNNNNCTCC	4 cut(s)	444, 474, 552, 582
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 722, 736
Bse1I	ACTGG	2 cut(s)	129, 1440
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	991, 1468
BseDI	CCNNGG	3 cut(s)	153, 688, 913
BseGI	GGATG	4 cut(s)	94, 612, 652, 669
BseLI	CCNNNNNNNGG	3 cut(s)	356, 722, 736
BseMI	GCAATG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	129, 1440
BseRI	GAGGAG	2 cut(s)	616, 902
BseSI	GKGCMC	4 cut(s)	351, 1201, 1678, 1785
BseXI	GCAGC	2 cut(s)	71, 170
Bsh1236I	CGCG	1 cut(s)	696
Bsh1285I	CGRYCG	1 cut(s)	700
BshFI	GGCC	6 cut(s)	273, 293, 693, 715, 726, 773
BshNI	GGYRCC	5 cut(s)	11, 125, 346, 743, 1780
BsiEI	CGRYCG	1 cut(s)	700
BsiSI	CCGG	1 cut(s)	716
BslI	CCNNNNNNNGG	3 cut(s)	356, 722, 736
BsmAI	GTCTC	2 cut(s)	964, 1441
BsnI	GGCC	6 cut(s)	273, 293, 693, 715, 726, 773
Bsp1286I	GDGCHC	4 cut(s)	351, 1201, 1678, 1785
Bsp1407I	TGTACA	1 cut(s)	601
Bsp143I	GATC	4 cut(s)	466, 487, 697, 1363
Bsp19I	CCATGG	2 cut(s)	153, 688
BspACI	CCGC	3 cut(s)	694, 757, 1622
BspANI	GGCC	6 cut(s)	273, 293, 693, 715, 726, 773
BspFNI	CGCG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	5 cut(s)	13, 127, 348, 745, 1782
BspMAI	CTGCAG	1 cut(s)	735
BspMI	ACCTGC	1 cut(s)	738
BspPI	GGATC	1 cut(s)	495
BspT107I	GGYRCC	5 cut(s)	11, 125, 346, 743, 1780
BsrDI	GCAATG	1 cut(s)	507
BsrGI	TGTACA	1 cut(s)	601
BsrI	ACTGG	2 cut(s)	129, 1440
BssECI	CCNNGG	3 cut(s)	153, 688, 913
BssMI	GATC	4 cut(s)	466, 487, 697, 1363
BssNI	GRCGYC	1 cut(s)	744
BssT1I	CCWWGG	2 cut(s)	153, 688
Bst2UI	CCWGG	2 cut(s)	991, 1468
Bst4CI	ACNGT	2 cut(s)	315, 406
Bst6I	CTCTTC	2 cut(s)	686, 1791
BstACI	GRCGYC	1 cut(s)	744
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstAUI	TGTACA	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	1654
BstDSI	CCRYGG	2 cut(s)	153, 688
BstENI	CCTNNNNNAGG	1 cut(s)	734
BstF5I	GGATG	4 cut(s)	94, 612, 652, 669
BstFNI	CGCG	1 cut(s)	696
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	746
BstKTI	GATC	4 cut(s)	469, 490, 700, 1366
BstMAI	GTCTC	2 cut(s)	964, 1441
BstMBI	GATC	4 cut(s)	466, 487, 697, 1363
BstMCI	CGRYCG	1 cut(s)	700
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 56, 76, 389, 712
BstNI	CCWGG	2 cut(s)	991, 1468
BstNSI	RCATGY	3 cut(s)	113, 989, 1466
BstSCI	CCNGG	2 cut(s)	989, 1466
BstSFI	CTRYAG	2 cut(s)	275, 731
BstSLI	GKGCMC	4 cut(s)	351, 1201, 1678, 1785
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	2 cut(s)	71, 170
BstV2I	GAAGAC	5 cut(s)	96, 942, 983, 1419, 1460
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	6 cut(s)	273, 293, 693, 715, 726, 773
BtgI	CCRYGG	2 cut(s)	153, 688
BtgZI	GCGATG	3 cut(s)	1071, 1548, 1602
BtsCI	GGATG	4 cut(s)	94, 612, 652, 669
BtsI	GCAGTG	2 cut(s)	1138, 1615
BtsIMutI	CAGTG	3 cut(s)	392, 1138, 1615
BveI	ACCTGC	1 cut(s)	738
Cac8I	GCNNGC	1 cut(s)	1654
CaiI	CAGNNNCTG	1 cut(s)	800
CciI	TCATGA	1 cut(s)	1036
CfoI	GCGC	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	271, 772
Csp6I	GTAC	3 cut(s)	12, 505, 602
CviQI	GTAC	3 cut(s)	12, 505, 602
DinI	GGCGCC	1 cut(s)	745
DpnI	GATC	4 cut(s)	468, 489, 699, 1365
DpnII	GATC	4 cut(s)	466, 487, 697, 1363
DraI	TTTAAA	1 cut(s)	319
DrdI	GACNNNNNNGTC	2 cut(s)	944, 1421
DseDI	GACNNNNNNGTC	2 cut(s)	944, 1421
EaeI	YGGCCR	1 cut(s)	691
Eam1104I	CTCTTC	2 cut(s)	686, 1791
EarI	CTCTTC	2 cut(s)	686, 1791
EciI	GGCGGA	2 cut(s)	746, 1637
Eco130I	CCWWGG	2 cut(s)	153, 688
Eco57I	CTGAAG	4 cut(s)	395, 749, 1181, 1658
EcoNI	CCTNNNNNAGG	1 cut(s)	734
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	855
EcoRII	CCWGG	2 cut(s)	989, 1466
EcoT14I	CCWWGG	2 cut(s)	153, 688
EgeI	GGCGCC	1 cut(s)	745
EheI	GGCGCC	1 cut(s)	745
ErhI	CCWWGG	2 cut(s)	153, 688
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	60, 159, 694
FokI	GGATG	4 cut(s)	101, 599, 639, 656
Fsp4HI	GCNGC	3 cut(s)	60, 159, 694
FspBI	CTAG	5 cut(s)	137, 711, 963, 1191, 1668
GlaI	GCGC	1 cut(s)	745
GluI	GCNGC	3 cut(s)	60, 159, 694
GsuI	CTGGAG	3 cut(s)	348, 378, 1423
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	6 cut(s)	273, 293, 693, 715, 726, 773
HapII	CCGG	1 cut(s)	716
HhaI	GCGC	1 cut(s)	746
Hin1I	GRCGYC	1 cut(s)	744
Hin6I	GCGC	1 cut(s)	744
HinP1I	GCGC	1 cut(s)	744
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	9 cut(s)	101, 332, 430, 439, 557, 779, 957, 1337, 1434
HpaII	CCGG	1 cut(s)	716
HphI	GGTGA	3 cut(s)	131, 394, 865
Hpy166II	GTNNAC	2 cut(s)	604, 636
Hpy188III	TCNNGA	7 cut(s)	232, 357, 436, 1037, 1079, 1367, 1556
Hpy8I	GTNNAC	2 cut(s)	604, 636
Hpy99I	CGWCG	3 cut(s)	892, 1115, 1499
HpyAV	CCTTC	8 cut(s)	79, 110, 116, 229, 361, 669, 730, 763
HpyCH4III	ACNGT	2 cut(s)	315, 406
HpyCH4IV	ACGT	4 cut(s)	322, 945, 1422, 1552
HpyCH4V	TGCA	9 cut(s)	41, 50, 255, 392, 733, 942, 1131, 1419, 1608
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 56, 76, 389, 712
HpySE526I	ACGT	4 cut(s)	322, 945, 1422, 1552
Hsp92I	GRCGYC	1 cut(s)	744
HspAI	GCGC	1 cut(s)	744
KasI	GGCGCC	1 cut(s)	743
KpnI	GGTACC	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	466, 487, 697, 1363
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	2 cut(s)	71, 170
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	5 cut(s)	137, 711, 963, 1191, 1668
MaeII	ACGT	4 cut(s)	322, 945, 1422, 1552
MaeIII	GTNAC	1 cut(s)	871
MalI	GATC	4 cut(s)	468, 489, 699, 1365
MboI	GATC	4 cut(s)	466, 487, 697, 1363
MfeI	CAATTG	1 cut(s)	1373
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	4 cut(s)	351, 1201, 1678, 1785
Mly113I	GGCGCC	1 cut(s)	744
MlyI	GAGTC	6 cut(s)	110, 551, 773, 966, 1346, 1443
MmeI	TCCRAC	2 cut(s)	953, 1430
MseI	TTAA	4 cut(s)	318, 342, 996, 1473
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	2 cut(s)	991, 1468
MssI	GTTTAAAC	1 cut(s)	319
MunI	CAATTG	1 cut(s)	1373
MvaI	CCWGG	2 cut(s)	991, 1468
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	5 cut(s)	47, 56, 76, 389, 712
NarI	GGCGCC	1 cut(s)	744
NcoI	CCATGG	2 cut(s)	153, 688
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	4 cut(s)	466, 487, 697, 1363
NlaIV	GGNNCC	5 cut(s)	13, 127, 348, 745, 1782
NmeAIII	GCCGAG	1 cut(s)	894
NmuCI	GTSAC	1 cut(s)	871
NspI	RCATGY	3 cut(s)	113, 989, 1466
PagI	TCATGA	1 cut(s)	1036
PaqCI	CACCTGC	1 cut(s)	738
PciI	ACATGT	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	3 cut(s)	496, 1053, 1530
PfeI	GAWTC	3 cut(s)	332, 430, 439
PkrI	GCNGC	3 cut(s)	61, 160, 695
Ple19I	CGATCG	1 cut(s)	700
PleI	GAGTC	6 cut(s)	109, 551, 773, 965, 1345, 1442
PluTI	GGCGCC	1 cut(s)	747
PmeI	GTTTAAAC	1 cut(s)	319
PpsI	GAGTC	6 cut(s)	109, 551, 773, 965, 1345, 1442
PscI	ACATGT	1 cut(s)	109
PshBI	ATTAAT	1 cut(s)	996
Psp6I	CCWGG	2 cut(s)	989, 1466
PspGI	CCWGG	2 cut(s)	989, 1466
PspN4I	GGNNCC	5 cut(s)	13, 127, 348, 745, 1782
PspPI	GGNCC	2 cut(s)	271, 772
PstI	CTGCAG	1 cut(s)	735
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	1 cut(s)	466
PvuI	CGATCG	1 cut(s)	700
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	3 cut(s)	13, 506, 603
RsaNI	GTAC	3 cut(s)	12, 505, 602
SaqAI	TTAA	4 cut(s)	318, 342, 996, 1473
SatI	GCNGC	3 cut(s)	60, 159, 694
Sau3AI	GATC	4 cut(s)	466, 487, 697, 1363
Sau96I	GGNCC	2 cut(s)	271, 772
SchI	GAGTC	6 cut(s)	110, 551, 773, 966, 1346, 1443
ScrFI	CCNGG	2 cut(s)	991, 1468
SduI	GDGCHC	4 cut(s)	351, 1201, 1678, 1785
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	2 cut(s)	275, 731
SfoI	GGCGCC	1 cut(s)	745
SmlI	CTYRAG	2 cut(s)	434, 513
SmoI	CTYRAG	2 cut(s)	434, 513
SsiI	CCGC	3 cut(s)	694, 757, 1622
SspDI	GGCGCC	1 cut(s)	743
SspMI	CTAG	5 cut(s)	137, 711, 963, 1191, 1668
StyD4I	CCNGG	2 cut(s)	989, 1466
StyI	CCWWGG	2 cut(s)	153, 688
TaaI	ACNGT	2 cut(s)	315, 406
TaiI	ACGT	4 cut(s)	325, 948, 1425, 1555
TaqI	TCGA	5 cut(s)	231, 442, 850, 1047, 1524
TatI	WGTACW	1 cut(s)	601
TauI	GCSGC	1 cut(s)	696
TfiI	GAWTC	3 cut(s)	332, 430, 439
Tru1I	TTAA	4 cut(s)	318, 342, 996, 1473
Tru9I	TTAA	4 cut(s)	318, 342, 996, 1473
TscAI	CASTG	3 cut(s)	399, 1138, 1615
TseFI	GTSAC	1 cut(s)	871
TseI	GCWGC	2 cut(s)	59, 158
Tsp45I	GTSAC	1 cut(s)	871
TspDTI	ATGAA	8 cut(s)	174, 217, 357, 911, 1025, 1053, 1388, 1502
TspGWI	ACGGA	1 cut(s)	1128
TspRI	CASTG	3 cut(s)	399, 1138, 1615
VspI	ATTAAT	1 cut(s)	996
XagI	CCTNNNNNAGG	1 cut(s)	734
XapI	RAATTY	5 cut(s)	804, 855, 864, 1043, 1520
XceI	RCATGY	3 cut(s)	113, 989, 1466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XspI	CTAG	5 cut(s)	137, 711, 963, 1191, 1668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.