Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

48107363 .. 48108552

Gene Structure 1190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAGACTAACGGCGTCATTGACGTCGTGTATGTATACTAGGTCGATTTTGAAACCTCATGTTGGAACAGTTCTTCTCGGTTGTGCCTTTTTTTATGACATCTTCTGGGTATTTGTTTCTAAATGGTGGTTCCATGAGAGTGTCATGATAGTGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTAAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTACAGCATCATTGGGTTTGGTGATATTATCTTACCTGGAGCCTTTTCACTAAGGTATGATTGGTTGACAAATAAGAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

105

Amino Acids

12.01

Weight (kDa)

8.66

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_A22B	PF04258	20 - 104	1.2e-33	Signal peptide peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	215
AcyI	GRCGYC	2 cut(s)	14, 23
AfiI	CCNNNNNNNGG	2 cut(s)	62, 230
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	268
AlwI	GGATC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	176, 266
BauI	CACGAG	1 cut(s)	159
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	131, 274
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	291
BsaHI	GRCGYC	2 cut(s)	14, 23
BsaJI	CCNNGG	2 cut(s)	209, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 230
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	209, 224
BseGI	GGATG	2 cut(s)	187, 219
BseLI	CCNNNNNNNGG	2 cut(s)	62, 230
BslI	CCNNNNNNNGG	2 cut(s)	62, 230
Bsp143I	GATC	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	131, 274
BspPI	GGATC	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	209, 224
BssMI	GATC	1 cut(s)	220
BssNAI	GTATAC	1 cut(s)	36
BssNI	GRCGYC	2 cut(s)	14, 23
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	224
Bst1107I	GTATAC	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	70
BstACI	GRCGYC	2 cut(s)	14, 23
BstDEI	CTNAG	1 cut(s)	284
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	187, 219
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	235
BstZ17I	GTATAC	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	187, 219
CciI	TCATGA	1 cut(s)	144
CseI	GACGC	1 cut(s)	3
CviAII	CATG	3 cut(s)	59, 134, 145
CviJI	RGCY	3 cut(s)	158, 234, 275
CviKI_1	RGCY	3 cut(s)	158, 234, 275
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	3 cut(s)	62, 137, 148
FaiI	YATR	7 cut(s)	32, 36, 60, 96, 135, 146, 291
FatI	CATG	3 cut(s)	58, 133, 144
FblI	GTMKAC	1 cut(s)	35
FokI	GGATG	2 cut(s)	194, 226
FspBI	CTAG	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	3
Hin1I	GRCGYC	2 cut(s)	14, 23
Hin1II	CATG	3 cut(s)	62, 137, 148
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HphI	GGTGA	2 cut(s)	176, 266
Hpy166II	GTNNAC	2 cut(s)	36, 300
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	2 cut(s)	36, 300
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	2 cut(s)	14, 23
Hsp92II	CATG	3 cut(s)	62, 137, 148
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	3 cut(s)	91, 255, 282
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	23
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	65, 94
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	66, 172
MslI	CAYNNNNRTG	2 cut(s)	138, 149
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	62, 137, 148
NlaIV	GGNNCC	2 cut(s)	131, 274
PagI	TCATGA	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	131, 274
RseI	CAYNNNNRTG	2 cut(s)	138, 149
Sau3AI	GATC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	5 cut(s)	26, 44, 58, 271, 290
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	138, 149
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	44
TspGWI	ACGGA	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	35
XspI	CTAG	1 cut(s)	39
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.