RchiOBHm_Chr1g0356271

Flotillin-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
48784205 .. 48784471
267 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGATGATCAATGGTGGGATATATTCAGCAATTGCTAGGATTAATGCTGACTTCGTGAAAGGACTTCAGCCTAGGATTAACATCTGGACTAATGGGGGAGAAGCTGCAGACGGTGGTGCTGGTGATGGCAATGCGGCTATGAAGGGGATTGTCGGCCTTTATAAGACTCTGCCACCATTGTTACTGACAGTTCAAGACCAAACTAGAATGCAGCCTCCTAGTTGGATGGGAACTTTGTCAGTCGAAGATTCTCAATGTAGGAATTGA

Protein Analysis

88

Amino Acids

9.36

Weight (kDa)

6.05

Isoelectric Point (pI)

26.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AciI CCGC 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 194
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 104, 211
AseI ATTAAT 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 134
AvrII CCTAGG 1 cut(s) 71
BbvI GCAGC 2 cut(s) 91, 223
BccI CCATC 2 cut(s) 119, 220
BclI TGATCA 1 cut(s) 6
BfaI CTAG 4 cut(s) 36, 72, 204, 219
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 3 cut(s) 105, 135, 212
BlnI CCTAGG 1 cut(s) 71
BlsI GCNGC 3 cut(s) 106, 136, 213
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 80
BseMI GCAATG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 91, 223
BshFI GGCC 1 cut(s) 156
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 113, 190
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 91, 223
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 231
CviJI RGCY 5 cut(s) 70, 104, 137, 156, 214
CviKI_1 RGCY 5 cut(s) 70, 104, 137, 156, 214
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaiI YATR 3 cut(s) 22, 140, 162
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 3 cut(s) 105, 135, 212
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 3 cut(s) 105, 135, 212
FspBI CTAG 4 cut(s) 36, 72, 204, 219
GluI GCNGC 3 cut(s) 105, 135, 212
HaeIII GGCC 1 cut(s) 156
HinfI GANTC 2 cut(s) 166, 248
HphI GGTGA 1 cut(s) 134
Hpy188III TCNNGA 3 cut(s) 55, 85, 194
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 113, 190
HpyCH4V TGCA 2 cut(s) 107, 211
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 2 cut(s) 70, 105
Lsp1109I GCAGC 2 cut(s) 91, 223
MaeI CTAG 4 cut(s) 36, 72, 204, 219
MaeIII GTNAC 1 cut(s) 180
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 1 cut(s) 257
MfeI CAATTG 1 cut(s) 30
MluCI AATT 2 cut(s) 30, 262
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 1 cut(s) 225
MseI TTAA 2 cut(s) 42, 78
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 213
NdeII GATC 1 cut(s) 6
PctI GAATGC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 3 cut(s) 106, 136, 213
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PshBI ATTAAT 1 cut(s) 42
PsiI TTATAA 1 cut(s) 162
PstI CTGCAG 1 cut(s) 109
SaqAI TTAA 2 cut(s) 42, 78
SatI GCNGC 3 cut(s) 105, 135, 212
Sau3AI GATC 1 cut(s) 6
SchI GAGTC 1 cut(s) 160
SetI ASST 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 105
SgeI CNNG 8 cut(s) 48, 67, 84, 97, 132, 206, 216, 231
Sse9I AATT 2 cut(s) 30, 262
SsiI CCGC 1 cut(s) 134
SspMI CTAG 4 cut(s) 36, 72, 204, 219
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 2 cut(s) 113, 190
TaqI TCGA 1 cut(s) 243
TasI AATT 2 cut(s) 30, 262
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 42, 78
Tru9I TTAA 2 cut(s) 42, 78
TseI GCWGC 2 cut(s) 104, 211
TspDTI ATGAA 1 cut(s) 155
VspI ATTAAT 1 cut(s) 42
XmaJI CCTAGG 1 cut(s) 71
XspI CTAG 4 cut(s) 36, 72, 204, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.