RchiOBHm_Chr1g0356441

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
48928544 .. 48929842
1299 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
ATGGAGGAATGGGGTGAGGAAAGGGATCTTCTGGTAAATCTGTTTGGAAAGTTCAGGGATGAGTGGATGGATCAGGACTTGAATACTTGGATTGGTGCAACTAGGTACCCAATTCGGATATTTTGCAAAGTGATCGTGTATATATATGTGTTTGATGTGTCTTTGCTTGAGATTGCATGGTCAAAATCTGAAGCAAAGAAAATAGCATTCGTTTCTGTTGGCCGATTTGCTGACGCTTTAGTACTGCGAGAACTTGCAGGAGTTACAATACCACCTGAAAGAATCTTTGGTCTTGGTTCTGATCCTAAGGTAGAAGTATTGAAGATGCTTCAGAAGAAACCAGAACATCAAGGGCTGAAACTGCCCTTTGTGGAAGATAGACTGGCAACCCTAAAGAATGTTATCAAAGAACCTGAATTGGATGGTTGGAGCTTGTATCTAGGCACACTTCTTTCTACCCTGTGGGATTGGGGGTACAATACAGAGGAAGAGAGAGACGAAGCTGCTAGAATCTCCAGGATTCAGATTCTTCAGCTTTCTGACTTAAGCACAAAGTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.66

Weight (kDa)

5.12

Isoelectric Point (pI)

26.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 105
AclWI GGATC 3 cut(s) 33, 78, 296
AcoI YGGCCR 1 cut(s) 220
AcuI CTGAAG 3 cut(s) 210, 314, 515
AfaI GTAC 3 cut(s) 107, 243, 476
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 3 cut(s) 82, 322, 559
AjnI CCWGG 1 cut(s) 515
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 3 cut(s) 432, 503, 535
AluI AGCT 3 cut(s) 432, 503, 535
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 3 cut(s) 33, 78, 296
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 503
Asp718I GGTACC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 26
AxyI CCTNAGG 1 cut(s) 306
BanI GGYRCC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 490
BccI CCATC 2 cut(s) 61, 416
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 3 cut(s) 102, 440, 507
BfrI CTTAAG 1 cut(s) 544
BisI GCNGC 1 cut(s) 504
BlsI GCNGC 1 cut(s) 505
BmcAI AGTACT 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 517
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 517
BmsI GCATC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 387
Bse21I CCTNAGG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 517
BseGI GGATG 3 cut(s) 64, 72, 427
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 1 cut(s) 490
BshFI GGCC 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 489
BsmBI CGTCTC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 1 cut(s) 222
Bsp143I GATC 4 cut(s) 25, 70, 132, 301
BspANI GGCC 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 107
BspPI GGATC 3 cut(s) 33, 78, 296
BspT107I GGYRCC 1 cut(s) 105
BspTI CTTAAG 1 cut(s) 544
BsrI ACTGG 1 cut(s) 387
BssMI GATC 4 cut(s) 25, 70, 132, 301
Bst2UI CCWGG 1 cut(s) 517
Bst6I CTCTTC 1 cut(s) 483
BstAFI CTTAAG 1 cut(s) 544
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 64, 72, 427
BstKTI GATC 4 cut(s) 28, 73, 135, 304
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 4 cut(s) 25, 70, 132, 301
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 515
BstV1I GCAGC 1 cut(s) 490
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 3 cut(s) 64, 72, 427
CseI GACGC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 106, 242, 475
CviAII CATG 1 cut(s) 177
CviJI RGCY 5 cut(s) 222, 355, 432, 503, 535
CviKI_1 RGCY 5 cut(s) 222, 355, 432, 503, 535
CviQI GTAC 3 cut(s) 106, 242, 475
DdeI CTNAG 1 cut(s) 306
DpnI GATC 4 cut(s) 27, 72, 134, 303
DpnII GATC 4 cut(s) 25, 70, 132, 301
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco57I CTGAAG 3 cut(s) 210, 314, 515
Eco81I CCTNAGG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 515
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 1 cut(s) 180
FaiI YATR 5 cut(s) 141, 143, 145, 147, 178
FatI CATG 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 504
FokI GGATG 3 cut(s) 71, 79, 434
Fsp4HI GCNGC 1 cut(s) 504
FspBI CTAG 3 cut(s) 102, 440, 507
GluI GCNGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 499
HaeIII GGCC 1 cut(s) 222
HgaI GACGC 1 cut(s) 242
Hin1II CATG 1 cut(s) 180
HinfI GANTC 4 cut(s) 282, 510, 520, 526
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 6 cut(s) 117, 190, 301, 333, 525, 541
Hpy188III TCNNGA 1 cut(s) 74
HpyCH4V TGCA 4 cut(s) 98, 126, 176, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 1 cut(s) 180
KpnI GGTACC 1 cut(s) 109
Kzo9I GATC 4 cut(s) 25, 70, 132, 301
LmnI GCTCC 1 cut(s) 429
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 1 cut(s) 315
MaeI CTAG 3 cut(s) 102, 440, 507
MaeIII GTNAC 1 cut(s) 262
MalI GATC 4 cut(s) 27, 72, 134, 303
MboI GATC 4 cut(s) 25, 70, 132, 301
MboII GAAGA 6 cut(s) 20, 334, 346, 386, 500, 521
MflI RGATCY 1 cut(s) 25
MluCI AATT 2 cut(s) 111, 416
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 2 cut(s) 10, 478
MseI TTAA 1 cut(s) 545
MspCI CTTAAG 1 cut(s) 544
MspR9I CCNGG 1 cut(s) 517
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 517
MwoI GCNNNNNNNGC 1 cut(s) 361
NdeII GATC 4 cut(s) 25, 70, 132, 301
NlaIII CATG 1 cut(s) 180
NlaIV GGNNCC 1 cut(s) 107
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 4 cut(s) 282, 510, 520, 526
PfoI TCCNGGA 1 cut(s) 515
PkrI GCNGC 1 cut(s) 505
Psp6I CCWGG 1 cut(s) 515
PspGI CCWGG 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 3 cut(s) 107, 243, 476
RsaNI GTAC 3 cut(s) 106, 242, 475
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 1 cut(s) 504
Sau3AI GATC 4 cut(s) 25, 70, 132, 301
ScaI AGTACT 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 517
SetI ASST 7 cut(s) 107, 277, 312, 415, 434, 505, 537
SfaNI GCATC 1 cut(s) 315
SmlI CTYRAG 2 cut(s) 167, 544
SmoI CTYRAG 2 cut(s) 167, 544
Sse9I AATT 2 cut(s) 111, 416
SspMI CTAG 3 cut(s) 102, 440, 507
StyD4I CCNGG 1 cut(s) 515
TasI AATT 2 cut(s) 111, 416
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 4 cut(s) 282, 510, 520, 526
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TseI GCWGC 1 cut(s) 503
Vha464I CTTAAG 1 cut(s) 544
XspI CTAG 3 cut(s) 102, 440, 507
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.