Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

49285167 .. 49285889

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATCTTCATCTGTTGCCATGGGCATGTGGAAGCACCACGTTGTGCAATTATATTAAAGATTTTGGAACATGGAAGTATCAGAGGTCTTAGTATCTTGTCTTTTGAGCTTGAACTAGTTGGTTACACGATTGCTTTGGCATATTGTCTTCATGGAGGGCTTCCCTTCTCAGCTTATGGGGAACTGGCCTTTCTTTTGATCCAAGATCGTAGTTTTCAAACAAGGAGCCTCAGAACCTTGTTTATCATTTGTTGGCCTTATTGGACTAGGTGTTGTTGCATGCAATTCTATAGCATTAGGAAGAGCGGTTATGGCAATCCCAAAGGATCTAACACTGTTGCCTTTTTTGCCTTTTTTTTTTTTACAGCTCTAATATTAGTTGCCATTATGTACTATTACTCCCAACCTGTAAGCATCAAAAGATGGATGACGGCATTACTGTATCCTTCTCTCTTAAGGAAGAGAAGAATAAGATTTTTATTTTTTTTTAATGTGGAAATTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

168

Amino Acids

19.58

Weight (kDa)

9.5

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	2 cut(s)	193, 334
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	392
AflII	CTTAAG	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	113, 218
AhlI	ACTAGT	1 cut(s)	115
AluBI	AGCT	3 cut(s)	109, 173, 368
AluI	AGCT	3 cut(s)	109, 173, 368
AlwI	GGATC	2 cut(s)	193, 334
AoxI	GGCC	2 cut(s)	186, 254
BbsI	GAAGAC	1 cut(s)	140
BccI	CCATC	1 cut(s)	417
BceAI	ACGGC	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	453
BcuI	ACTAGT	1 cut(s)	115
BfaI	CTAG	2 cut(s)	116, 267
BfmI	CTRYAG	1 cut(s)	289
BfrI	CTTAAG	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	453
BmiI	GGNNCC	1 cut(s)	227
BmsI	GCATC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bse1I	ACTGG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	432
BseJI	GATNNNNATC	1 cut(s)	8
BseMII	CTCAG	2 cut(s)	183, 244
BseNI	ACTGG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	188, 256
BsnI	GGCC	2 cut(s)	188, 256
Bsp143I	GATC	4 cut(s)	3, 198, 205, 326
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	2 cut(s)	188, 256
BspCNI	CTCAG	2 cut(s)	182, 243
BspLI	GGNNCC	1 cut(s)	227
BspPI	GGATC	2 cut(s)	193, 334
BspQI	GCTCTTC	1 cut(s)	296
BspTI	CTTAAG	1 cut(s)	454
BsrBI	CCGCTC	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	4 cut(s)	3, 198, 205, 326
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	337, 441
Bst6I	CTCTTC	2 cut(s)	296, 455
BstAFI	CTTAAG	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	3 cut(s)	89, 169, 230
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	432
BstKTI	GATC	4 cut(s)	6, 201, 208, 329
BstMBI	GATC	4 cut(s)	3, 198, 205, 326
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 347
BstNSI	RCATGY	2 cut(s)	29, 283
BstSFI	CTRYAG	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuI	GTATCC	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	188, 256
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	5 cut(s)	20, 26, 71, 152, 280
CviJI	RGCY	7 cut(s)	109, 160, 173, 188, 228, 256, 368
CviKI_1	RGCY	7 cut(s)	109, 160, 173, 188, 228, 256, 368
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	3 cut(s)	89, 169, 230
DpnI	GATC	4 cut(s)	5, 200, 207, 328
DpnII	GATC	4 cut(s)	3, 198, 205, 326
DraIII	CACNNNGTG	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	296, 455
EarI	CTCTTC	2 cut(s)	296, 455
Eco130I	CCWWGG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	5 cut(s)	23, 29, 74, 155, 283
FatI	CATG	5 cut(s)	19, 25, 70, 151, 279
FokI	GGATG	1 cut(s)	439
FspBI	CTAG	2 cut(s)	116, 267
HaeIII	GGCC	2 cut(s)	188, 256
Hin1II	CATG	5 cut(s)	23, 29, 74, 155, 283
Hpy188I	TCNGA	2 cut(s)	83, 233
HpyAV	CCTTC	2 cut(s)	175, 456
HpyCH4III	ACNGT	2 cut(s)	337, 441
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	47, 279, 283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 347
HpyF3I	CTNAG	3 cut(s)	89, 169, 230
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	5 cut(s)	23, 29, 74, 155, 283
Kzo9I	GATC	4 cut(s)	3, 198, 205, 326
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	2 cut(s)	170, 420
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	2 cut(s)	116, 267
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	4 cut(s)	5, 200, 207, 328
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	4 cut(s)	3, 198, 205, 326
MboII	GAAGA	4 cut(s)	140, 313, 472, 477
MflI	RGATCY	1 cut(s)	326
MluCI	AATT	3 cut(s)	48, 284, 498
MnlI	CCTC	3 cut(s)	77, 149, 239
MseI	TTAA	4 cut(s)	56, 455, 489, 501
MslI	CAYNNNNRTG	1 cut(s)	24
MspCI	CTTAAG	1 cut(s)	454
MwoI	GCNNNNNNNGC	2 cut(s)	312, 347
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	3, 198, 205, 326
NlaIII	CATG	5 cut(s)	23, 29, 74, 155, 283
NlaIV	GGNNCC	1 cut(s)	227
NspI	RCATGY	2 cut(s)	29, 283
PaeI	GCATGC	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	4 cut(s)	56, 455, 489, 501
Sau3AI	GATC	4 cut(s)	3, 198, 205, 326
SetI	ASST	8 cut(s)	43, 88, 111, 175, 239, 272, 370, 409
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
SpeI	ACTAGT	1 cut(s)	115
SphI	GCATGC	1 cut(s)	283
Sse9I	AATT	3 cut(s)	48, 284, 498
SsiI	CCGC	1 cut(s)	306
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	2 cut(s)	116, 267
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	337, 441
TaiI	ACGT	1 cut(s)	43
TasI	AATT	3 cut(s)	48, 284, 498
TatI	WGTACW	1 cut(s)	390
Tru1I	TTAA	4 cut(s)	56, 455, 489, 501
Tru9I	TTAA	4 cut(s)	56, 455, 489, 501
TscAI	CASTG	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	340
Vha464I	CTTAAG	1 cut(s)	454
XceI	RCATGY	2 cut(s)	29, 283
XspI	CTAG	2 cut(s)	116, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.