RchiOBHm_Chr1g0357111

3-hydroxyisobutyryl-CoA hydrolase 1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
49522396 .. 49522686
291 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGGCTTCTTTTAGCTCAGATCATCATGATCATGGAAATCCAGAGATTCTAGTACAAGAGAATAATCCATTCATTAGGACATTGACACTCCACAAGCCTAAAAAATTGAATGTTCTCTCCACTCCCGTGGTCTTGCGGCTATTTGAGCTGTTCCTCAACTACGAGCACGATGCCTCTGTCAAGTTAGTCATTCTCAAAGGTAGCGGAAAAGCTTTTTCTGCCGGTGGTGATGTTGTGTATGTAGCACATCATCTCTATAATGGCAATTTCAGATCTGCTCTCTAA

Protein Analysis

94

Amino Acids

10.48

Weight (kDa)

8.13

Isoelectric Point (pI)

22.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 25 - 87 8.5e-15 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 25 - 84 1.7e-09 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 136, 204
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 1 cut(s) 109
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 3 cut(s) 15, 148, 212
AluI AGCT 3 cut(s) 15, 148, 212
Alw21I GWGCWC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BclI TGATCA 1 cut(s) 28
BfaI CTAG 1 cut(s) 50
BglII AGATCT 1 cut(s) 272
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BmsI GCATC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 126
Bse118I RCCGGY 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 3 cut(s) 19, 28, 272
BspACI CCGC 2 cut(s) 136, 204
BspCNI CTCAG 1 cut(s) 29
BspHI TCATGA 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 3 cut(s) 19, 28, 272
BstDEI CTNAG 1 cut(s) 16
BstDSI CCRYGG 1 cut(s) 126
BstKTI GATC 3 cut(s) 22, 31, 275
BstMBI GATC 3 cut(s) 19, 28, 272
BstMWI GCNNNNNNNGC 2 cut(s) 145, 218
BstX2I RGATCY 1 cut(s) 272
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 126
CciI TCATGA 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 221
Csp6I GTAC 1 cut(s) 53
CviAII CATG 2 cut(s) 26, 32
CviJI RGCY 6 cut(s) 5, 15, 97, 139, 148, 212
CviKI_1 RGCY 6 cut(s) 5, 15, 97, 139, 148, 212
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 16
DpnI GATC 3 cut(s) 21, 30, 274
DpnII GATC 3 cut(s) 19, 28, 272
FaeI CATG 2 cut(s) 29, 35
FaiI YATR 4 cut(s) 27, 33, 240, 258
FatI CATG 2 cut(s) 25, 31
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 50
GluI GCNGC 1 cut(s) 137
HapII CCGG 1 cut(s) 222
Hin1II CATG 2 cut(s) 29, 35
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 1 cut(s) 46
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 19, 272
Hpy188III TCNNGA 2 cut(s) 26, 41
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 218
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 2 cut(s) 29, 35
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 3 cut(s) 19, 28, 272
LpnPI CCDG 2 cut(s) 54, 235
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 50
MalI GATC 3 cut(s) 21, 30, 274
MboI GATC 3 cut(s) 19, 28, 272
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 2 cut(s) 104, 265
MnlI CCTC 2 cut(s) 164, 184
MslI CAYNNNNRTG 2 cut(s) 30, 125
MspI CCGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 145, 218
NdeII GATC 3 cut(s) 19, 28, 272
NlaIII CATG 2 cut(s) 29, 35
OliI CACNNNNGTG 1 cut(s) 125
PagI TCATGA 1 cut(s) 25
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 1 cut(s) 138
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 2 cut(s) 30, 125
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 3 cut(s) 19, 28, 272
SduI GDGCHC 1 cut(s) 168
SetI ASST 4 cut(s) 17, 150, 202, 214
SfaNI GCATC 1 cut(s) 160
SmiMI CAYNNNNRTG 2 cut(s) 30, 125
Sse9I AATT 2 cut(s) 104, 265
SsiI CCGC 2 cut(s) 136, 204
SspMI CTAG 1 cut(s) 50
TasI AATT 2 cut(s) 104, 265
TatI WGTACW 1 cut(s) 52
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 61
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.