RchiOBHm_Chr1g0357981

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
50177155 .. 50178636
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGTCAAATGTAACAAAAAGAGATCCTGCAGCTCAGTTCCTTATTGTAATCAGAAGCAAGGATACCATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGATAAATAGAAGAATGGAATTTGTATTCGCAAGTCACAGTTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTCTGGACGAGTGTAGGCTGGTTAACTGTAGAAATCCACTGGCTGTTTTGGATGTAAGCATCGAGATACTGGCCACTGTAGGCGAAGATGATGGGGTAACACACTGCTTGATTAGGACTGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

102

Amino Acids

11.41

Weight (kDa)

6.07

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 125
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AlwI GGATC 1 cut(s) 17
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 29, 86
ApoI RAATTY 1 cut(s) 125
BalI TGGCCA 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 46, 78
BbvI GCAGC 2 cut(s) 41, 73
BccI CCATC 1 cut(s) 266
BciVI GTATCC 1 cut(s) 55
BfmI CTRYAG 3 cut(s) 27, 208, 258
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 2 cut(s) 30, 87
BlsI GCNGC 2 cut(s) 31, 88
BmsI GCATC 1 cut(s) 249
Bse1I ACTGG 3 cut(s) 225, 255, 304
BseGI GGATG 2 cut(s) 174, 238
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 3 cut(s) 225, 255, 304
BseXI GCAGC 2 cut(s) 41, 73
BshFI GGCC 1 cut(s) 254
BsnI GGCC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 22, 77
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 1 cut(s) 17
BsrI ACTGG 3 cut(s) 225, 255, 304
BssMI GATC 2 cut(s) 22, 77
Bst4CI ACNGT 3 cut(s) 146, 209, 259
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 174, 238
BstKTI GATC 2 cut(s) 25, 80
BstMBI GATC 2 cut(s) 22, 77
BstSFI CTRYAG 3 cut(s) 27, 208, 258
BstV1I GCAGC 2 cut(s) 41, 73
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 2 cut(s) 174, 238
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 3 cut(s) 218, 255, 283
CviJI RGCY 4 cut(s) 32, 199, 224, 254
CviKI_1 RGCY 4 cut(s) 32, 199, 224, 254
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 24, 79
DpnII GATC 2 cut(s) 22, 77
EaeI YGGCCR 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 30, 87
FokI GGATG 2 cut(s) 181, 245
Fsp4HI GCNGC 2 cut(s) 30, 87
GluI GCNGC 2 cut(s) 30, 87
HaeIII GGCC 1 cut(s) 254
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaI GTTAAC 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 2 cut(s) 185, 244
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 3 cut(s) 146, 209, 259
HpyCH4V TGCA 2 cut(s) 29, 106
HpyF3I CTNAG 1 cut(s) 33
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 22, 77
LpnPI CCDG 7 cut(s) 39, 75, 170, 185, 206, 236, 285
Lsp1109I GCAGC 2 cut(s) 41, 73
LweI GCATC 1 cut(s) 249
MaeIII GTNAC 3 cut(s) 10, 140, 277
MalI GATC 2 cut(s) 24, 79
MboI GATC 2 cut(s) 22, 77
MboII GAAGA 2 cut(s) 129, 278
MflI RGATCY 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 1 cut(s) 125
MluNI TGGCCA 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 146, 153
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 254
NdeII GATC 2 cut(s) 22, 77
NmuCI GTSAC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 31, 88
PstI CTGCAG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 22
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 2 cut(s) 30, 87
Sau3AI GATC 2 cut(s) 22, 77
SetI ASST 2 cut(s) 34, 181
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 3 cut(s) 27, 208, 258
Sse9I AATT 1 cut(s) 125
TaaI ACNGT 3 cut(s) 146, 209, 259
TaqI TCGA 1 cut(s) 243
TasI AATT 1 cut(s) 125
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 3 cut(s) 225, 262, 290
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 2 cut(s) 29, 86
Tsp45I GTSAC 1 cut(s) 140
TspRI CASTG 3 cut(s) 225, 262, 290
XapI RAATTY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.