RchiOBHm_Chr1g0358141

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
50222448 .. 50224089
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
ATGAGTGGTACAGATCAAGCGTTAAGTTCCAGTTCTCGATTTGCTTCCCCTGAAGACTCAAGTAGGAAAACACCTATAGAATCATTGCAAGAGTGGTCTTCCGACCAGCTTCTAAAATCTAGAAAGAGGCTGAGTGGAAAGCCTGGTGAACTGTTAAAGGATGGCTATGTTGTAGCTCTATATGCAAGAGATATCCCCGGTCTTCATGTCGCAAGGGCGGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATACCATGTTAAATGTAACGAAAAGAGATCCTGCAGCTCAGTTCCTTATTGTAATCAGAAGCAAGGATACCATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGATAAATAGAAGACTGGAATTTGTATTCGCAAGTCATAGTTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTCTGGACGAGTGTAGGCTGGTTAACTGTAGAAATCCACTGGCTGTTTTGGATGTAAGCATCGAGATACTGGCCACTGTAGCCTGTAGGCGAAGAAGATGGGGTAACATGCTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

186

Amino Acids

20.81

Weight (kDa)

9.81

Isoelectric Point (pI)

67.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 1 cut(s) 10
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 3 cut(s) 109, 176, 293
AluI AGCT 3 cut(s) 109, 176, 293
AlwI GGATC 1 cut(s) 278
AoxI GGCC 1 cut(s) 513
ApeKI GCWGC 2 cut(s) 290, 347
ApoI RAATTY 1 cut(s) 386
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 158
BalI TGGCCA 1 cut(s) 515
BarI GAAGNNNNNNTAC 2 cut(s) 307, 339
BbsI GAAGAC 4 cut(s) 60, 90, 194, 385
BbvI GCAGC 2 cut(s) 302, 334
BccI CCATC 2 cut(s) 155, 534
BciT130I CCWGG 1 cut(s) 144
BciVI GTATCC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 198
BfaI CTAG 2 cut(s) 120, 254
BfmI CTRYAG 5 cut(s) 75, 288, 469, 519, 526
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 3 cut(s) 219, 291, 348
BlsI GCNGC 3 cut(s) 220, 292, 349
Bme1390I CCNGG 2 cut(s) 144, 198
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 2 cut(s) 144, 198
BmsI GCATC 1 cut(s) 510
BpiI GAAGAC 4 cut(s) 60, 90, 194, 385
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 196
Bse1I ACTGG 4 cut(s) 30, 387, 486, 516
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 3 cut(s) 166, 435, 499
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 122, 308
BseNI ACTGG 4 cut(s) 30, 387, 486, 516
BseXI GCAGC 2 cut(s) 302, 334
BshFI GGCC 1 cut(s) 515
BsiSI CCGG 1 cut(s) 198
BsnI GGCC 1 cut(s) 515
Bsp143I GATC 3 cut(s) 13, 283, 338
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 123, 307
BspLI GGNNCC 1 cut(s) 251
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 4 cut(s) 30, 387, 486, 516
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 3 cut(s) 13, 283, 338
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 3 cut(s) 153, 470, 520
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 2 cut(s) 131, 294
BstF5I GGATG 3 cut(s) 166, 435, 499
BstKTI GATC 3 cut(s) 16, 286, 341
BstMBI GATC 3 cut(s) 13, 283, 338
BstMWI GCNNNNNNNGC 3 cut(s) 182, 218, 521
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 2 cut(s) 142, 196
BstSFI CTRYAG 5 cut(s) 75, 288, 469, 519, 526
BstV1I GCAGC 2 cut(s) 302, 334
BstV2I GAAGAC 4 cut(s) 60, 90, 194, 385
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 515
BtsCI GGATG 3 cut(s) 166, 435, 499
BtsIMutI CAGTG 2 cut(s) 479, 516
Cac8I GCNNGC 1 cut(s) 555
Csp6I GTAC 1 cut(s) 9
CviAII CATG 3 cut(s) 206, 262, 550
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 2 cut(s) 131, 294
DpnI GATC 3 cut(s) 15, 285, 340
DpnII GATC 3 cut(s) 13, 283, 338
EaeI YGGCCR 1 cut(s) 513
Eco32I GATATC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 142
EcoRV GATATC 1 cut(s) 193
FaeI CATG 3 cut(s) 209, 265, 553
FaiI YATR 8 cut(s) 77, 168, 181, 183, 207, 263, 405, 551
FatI CATG 3 cut(s) 205, 261, 549
Fnu4HI GCNGC 3 cut(s) 219, 291, 348
FokI GGATG 3 cut(s) 173, 442, 506
Fsp4HI GCNGC 3 cut(s) 219, 291, 348
FspBI CTAG 2 cut(s) 120, 254
GluI GCNGC 3 cut(s) 219, 291, 348
HaeIII GGCC 1 cut(s) 515
HapII CCGG 1 cut(s) 198
Hin1II CATG 3 cut(s) 209, 265, 553
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 2 cut(s) 56, 80
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 1 cut(s) 198
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 149, 466
Hpy188I TCNGA 2 cut(s) 103, 314
Hpy188III TCNNGA 4 cut(s) 36, 120, 446, 505
Hpy8I GTNNAC 2 cut(s) 149, 466
HpyAV CCTTC 1 cut(s) 431
HpyCH4III ACNGT 3 cut(s) 153, 470, 520
HpyCH4V TGCA 4 cut(s) 88, 185, 290, 367
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 218, 521
HpyF3I CTNAG 2 cut(s) 131, 294
Hsp92II CATG 3 cut(s) 209, 265, 553
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 3 cut(s) 13, 283, 338
Lsp1109I GCAGC 2 cut(s) 302, 334
LweI GCATC 1 cut(s) 510
MaeI CTAG 2 cut(s) 120, 254
MaeIII GTNAC 2 cut(s) 271, 545
MalI GATC 3 cut(s) 15, 285, 340
MboI GATC 3 cut(s) 13, 283, 338
MboII GAAGA 6 cut(s) 65, 90, 194, 390, 546, 549
MflI RGATCY 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 1 cut(s) 386
MluNI TGGCCA 1 cut(s) 515
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 3 cut(s) 126, 407, 414
MnlI CCTC 1 cut(s) 120
Mox20I TGGCCA 1 cut(s) 515
MscI TGGCCA 1 cut(s) 515
MseI TTAA 5 cut(s) 23, 155, 234, 266, 465
Msp20I TGGCCA 1 cut(s) 515
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 2 cut(s) 144, 198
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 182, 218, 521
NciI CCSGG 1 cut(s) 198
NdeII GATC 3 cut(s) 13, 283, 338
NlaIII CATG 3 cut(s) 209, 265, 553
NlaIV GGNNCC 1 cut(s) 251
NspI RCATGY 1 cut(s) 553
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 220, 292, 349
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SaqAI TTAA 5 cut(s) 23, 155, 234, 266, 465
SatI GCNGC 3 cut(s) 219, 291, 348
Sau3AI GATC 3 cut(s) 13, 283, 338
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 144, 198
SetI ASST 6 cut(s) 76, 111, 178, 241, 295, 442
SfaNI GCATC 1 cut(s) 510
SfcI CTRYAG 5 cut(s) 75, 288, 469, 519, 526
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 386
SsiI CCGC 1 cut(s) 218
SspMI CTAG 2 cut(s) 120, 254
StyD4I CCNGG 2 cut(s) 142, 196
TaaI ACNGT 3 cut(s) 153, 470, 520
TaqI TCGA 2 cut(s) 37, 504
TasI AATT 1 cut(s) 386
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 5 cut(s) 23, 155, 234, 266, 465
Tru9I TTAA 5 cut(s) 23, 155, 234, 266, 465
TscAI CASTG 2 cut(s) 486, 523
TseI GCWGC 2 cut(s) 290, 347
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 2 cut(s) 486, 523
XapI RAATTY 1 cut(s) 386
XbaI TCTAGA 1 cut(s) 119
XceI RCATGY 1 cut(s) 553
XspI CTAG 2 cut(s) 120, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.