RchiOBHm_Chr1g0358811

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
50820278 .. 50820532
255 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGTGTGGACGCAGCATGGAATCGATATCCATGGCCTCCATGACACAAGAAGTGAATGGACAACACAAGATAGAGCGACGTGAGTATTTCCAGATGCCTCTGCACTATCCAAGGTACAAAAAATGGGATATGACACCATGCCCGCCGGAGTGGAAGCTAGAATATTGTTTACTTAATTCGTATGGGCTACCAATCATTGGAGATGTTGAAGGAGTTAGGAAGTCTGCCATCGGACACTTCTTGTGGTCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.91

Weight (kDa)

8.49

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 36 - 83 1.4e-13 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AciI CCGC 1 cut(s) 143
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 209
AjiI CACGTC 1 cut(s) 80
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 236
BfaI CTAG 1 cut(s) 158
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmgBI CACGTC 1 cut(s) 80
BmsI GCATC 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 30, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 30, 110
BseLI CCNNNNNNNGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 23
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 197
BsnI GGCC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 35
BspDI ATCGAT 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 30, 110
BssT1I CCWWGG 2 cut(s) 30, 110
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 30
BtrI CACGTC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 23
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 115
CviAII CATG 4 cut(s) 16, 31, 40, 138
CviJI RGCY 3 cut(s) 35, 157, 187
CviKI_1 RGCY 3 cut(s) 35, 157, 187
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 249
Eco130I CCWWGG 2 cut(s) 30, 110
Eco32I GATATC 1 cut(s) 27
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 30, 110
ErhI CCWWGG 2 cut(s) 30, 110
FaeI CATG 4 cut(s) 19, 34, 43, 141
FaiI YATR 6 cut(s) 17, 32, 41, 131, 139, 183
FatI CATG 4 cut(s) 15, 30, 39, 137
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 158
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 146
HgaI GACGC 1 cut(s) 18
Hin1II CATG 4 cut(s) 19, 34, 43, 141
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 146
Hpy166II GTNNAC 2 cut(s) 8, 170
Hpy188I TCNGA 1 cut(s) 233
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 2 cut(s) 8, 170
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 4 cut(s) 19, 34, 43, 141
LpnPI CCDG 2 cut(s) 104, 159
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 79
MluCI AATT 1 cut(s) 175
MnlI CCTC 2 cut(s) 46, 108
MseI TTAA 1 cut(s) 174
MspI CCGG 1 cut(s) 146
NcoI CCATGG 1 cut(s) 30
NlaIII CATG 4 cut(s) 19, 34, 43, 141
PfeI GAWTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 1 cut(s) 14
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 13
SetI ASST 3 cut(s) 82, 116, 159
SfaNI GCATC 1 cut(s) 84
Sse9I AATT 1 cut(s) 175
SsiI CCGC 1 cut(s) 143
SspI AATATT 1 cut(s) 164
SspMI CTAG 1 cut(s) 158
StyI CCWWGG 2 cut(s) 30, 110
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 23
TasI AATT 1 cut(s) 175
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 1 cut(s) 12
Van91I CCANNNNNTGG 1 cut(s) 197
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.