Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

51615918 .. 51616352

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCGAAAGATAACCACGCTGCTGTCGCTGCACATCCTCTCCAACCACAAGTTGGAGTTGCTCAACCACGTCCGTGAATCGGAGCTGAAGGTGTCAACCAAACATATATTTGATATGCGGGAGCAAAAAAAATGTGTCTCAGATAAGGTGCTAGTGGACATGAAGAGGTGGTTTGGAGACTTAACTTTAAATGTCATGTTCAGGATGGTTGTTGGAAAGCGATTTTCTGGGGCTAACTTGGCGCAAGAGAATGAAGAGAACGAATGCTTTCGGAAGGCGTTGAGGGAATTTTTAAGATTTGGGTGGCGAATTTGTAATCTCAGATGCAGTTCCTGTTTGAGCCCAAAAGTAAGTTTGGCGAAATCCTTTAGTGGGTCTGAGCCAGTGGGCCGATACTTGCGGCCCAAAATGGGATTACATGGACTTGGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00980 ko00981 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map00981 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

144

Amino Acids

16.67

Weight (kDa)

9.93

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	52
AciI	CCGC	2 cut(s)	118, 400
AcsI	RAATTY	2 cut(s)	287, 309
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	4 cut(s)	52, 79, 372, 410
AjiI	CACGTC	1 cut(s)	70
AleI	CACNNNNGTG	1 cut(s)	72
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	142, 171
AlwNI	CAGNNNCTG	1 cut(s)	333
AoxI	GGCC	2 cut(s)	388, 401
ApeKI	GCWGC	2 cut(s)	19, 28
ApoI	RAATTY	2 cut(s)	287, 309
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	388, 402
BanII	GRGCYC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	6, 15
BccI	CCATC	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	142, 171
BfaI	CTAG	1 cut(s)	152
BisI	GCNGC	3 cut(s)	20, 29, 401
BlsI	GCNGC	3 cut(s)	21, 30, 402
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	388, 402
BmsI	GCATC	1 cut(s)	314
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 79, 372, 410
Bse1I	ACTGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	33, 210
BseLI	CCNNNNNNNGG	4 cut(s)	52, 79, 372, 410
BseMII	CTCAG	3 cut(s)	153, 334, 369
BseNI	ACTGG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	6, 15
BsgI	GTGCAG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	390, 403
BslI	CCNNNNNNNGG	4 cut(s)	52, 79, 372, 410
BsmAI	GTCTC	2 cut(s)	142, 171
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	390, 403
Bsp1286I	GDGCHC	1 cut(s)	344
BspACI	CCGC	2 cut(s)	118, 400
BspANI	GGCC	2 cut(s)	390, 403
BspCNI	CTCAG	3 cut(s)	152, 333, 370
BsrI	ACTGG	1 cut(s)	383
Bst6I	CTCTTC	2 cut(s)	158, 249
BstDEI	CTNAG	3 cut(s)	139, 320, 378
BstF5I	GGATG	2 cut(s)	33, 210
BstHHI	GCGC	1 cut(s)	244
BstMAI	GTCTC	2 cut(s)	142, 171
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 28, 239
BstV1I	GCAGC	2 cut(s)	6, 15
BsuRI	GGCC	2 cut(s)	390, 403
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	33, 210
BtsIMutI	CAGTG	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	333
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	388, 402
CviAII	CATG	3 cut(s)	160, 196, 419
CviJI	RGCY	6 cut(s)	85, 233, 342, 382, 390, 403
CviKI_1	RGCY	6 cut(s)	85, 233, 342, 382, 390, 403
DdeI	CTNAG	3 cut(s)	139, 320, 378
DraI	TTTAAA	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	158, 249
EarI	CTCTTC	2 cut(s)	158, 249
Eco24I	GRGCYC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	344
FaeI	CATG	3 cut(s)	163, 199, 422
FaiI	YATR	6 cut(s)	105, 107, 116, 161, 197, 420
FatI	CATG	3 cut(s)	159, 195, 418
FauI	CCCGC	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	20, 29, 401
FokI	GGATG	2 cut(s)	20, 217
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	20, 29, 401
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	3 cut(s)	20, 29, 401
HaeIII	GGCC	2 cut(s)	390, 403
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	163, 199, 422
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	96, 157
Hpy188I	TCNGA	5 cut(s)	82, 142, 273, 323, 379
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	2 cut(s)	96, 157
HpyAV	CCTTC	2 cut(s)	82, 268
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	31, 327
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 28, 239
HpyF3I	CTNAG	3 cut(s)	139, 320, 378
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	163, 199, 422
HspAI	GCGC	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	82, 121
LpnPI	CCDG	4 cut(s)	187, 213, 346, 396
Lsp1109I	GCAGC	2 cut(s)	6, 15
LweI	GCATC	1 cut(s)	314
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	69
MboII	GAAGA	2 cut(s)	175, 266
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	2 cut(s)	287, 309
MmeI	TCCRAC	3 cut(s)	33, 66, 193
MnlI	CCTC	3 cut(s)	47, 159, 276
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	3 cut(s)	182, 188, 293
MslI	CAYNNNNRTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	25, 28, 239
NlaIII	CATG	3 cut(s)	163, 199, 422
OliI	CACNNNNGTG	1 cut(s)	72
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	21, 30, 402
PspPI	GGNCC	2 cut(s)	388, 402
PstNI	CAGNNNCTG	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	182, 188, 293
SatI	GCNGC	3 cut(s)	20, 29, 401
Sau96I	GGNCC	2 cut(s)	388, 402
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	5 cut(s)	72, 87, 93, 150, 170
SfaNI	GCATC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	287, 309
SsiI	CCGC	2 cut(s)	118, 400
SspMI	CTAG	1 cut(s)	152
TaiI	ACGT	1 cut(s)	72
TasI	AATT	2 cut(s)	287, 309
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	3 cut(s)	182, 188, 293
Tru9I	TTAA	3 cut(s)	182, 188, 293
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	2 cut(s)	19, 28
TspDTI	ATGAA	2 cut(s)	176, 267
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	52
XapI	RAATTY	2 cut(s)	287, 309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.