RchiOBHm_Chr1g0361451

Protein arv1 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
53415655 .. 53416409
755 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGTGTCGAAGAAAATATTTATACAAAAAATATTGCGGACGAGTACATCGAGTGCGAGCCCATAGTAGAGCTTCTATCTTGGTTTGGTTTGTTGCGGAAGTCAGCTTTCGGGTTTCTACTTTTGGATGCTTGAGTCTCTTTCTGGAAAGGACCAAGGAAGAATGGGGTTTGTCCATGAGCTTTGCTTCATTGCTTTGGAGGTTTCAAAATATGCTGATGGATGTTGTCTTTGGGAATTTCATGGTTTTTTTCTACCTTTGTGCTTGCTACGAGGGCTGTTTTCAGCAAATTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

11.74

Weight (kDa)

9.38

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 95
AcsI RAATTY 1 cut(s) 235
AfaI GTAC 1 cut(s) 45
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 3 cut(s) 71, 105, 180
AluI AGCT 3 cut(s) 71, 105, 180
Alw26I GTCTC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 150
AvaII GGWCC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 61
BccI CCATC 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmsI GCATC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 151
BsaAI YACGTR 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 131, 226
BseMI GCAATG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 61
BspACI CCGC 2 cut(s) 36, 95
BsrDI GCAATG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 57, 265
BstF5I GGATG 2 cut(s) 131, 226
BstMAI GTCTC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstSNI TACGTA 1 cut(s) 294
BtsCI GGATG 2 cut(s) 131, 226
Cac8I GCNNGC 2 cut(s) 57, 265
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 44
CviAII CATG 2 cut(s) 175, 241
CviJI RGCY 5 cut(s) 59, 71, 105, 180, 276
CviKI_1 RGCY 5 cut(s) 59, 71, 105, 180, 276
CviQI GTAC 1 cut(s) 44
Eco105I TACGTA 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 2 cut(s) 178, 244
FaiI YATR 5 cut(s) 22, 63, 176, 212, 242
FatI CATG 2 cut(s) 174, 240
FokI GGATG 2 cut(s) 138, 233
FriOI GRGCYC 1 cut(s) 61
Hin1II CATG 2 cut(s) 178, 244
HinfI GANTC 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 2 cut(s) 178, 244
LpnPI CCDG 1 cut(s) 128
LweI GCATC 1 cut(s) 116
MaeII ACGT 1 cut(s) 293
MboII GAAGA 2 cut(s) 21, 170
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 2 cut(s) 235, 288
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 2 cut(s) 192, 265
MwoI GCNNNNNNNGC 1 cut(s) 273
NlaIII CATG 2 cut(s) 178, 244
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 294
PspPI GGNCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 61
SetI ASST 6 cut(s) 73, 107, 182, 203, 258, 296
SfaNI GCATC 1 cut(s) 116
SinI GGWCC 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
SnaBI TACGTA 1 cut(s) 294
Sse9I AATT 2 cut(s) 235, 288
SsiI CCGC 2 cut(s) 36, 95
SspI AATATT 2 cut(s) 17, 32
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 7, 49
TasI AATT 2 cut(s) 235, 288
TatI WGTACW 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 177, 229
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.