Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

53839673 .. 53841899

Gene Structure 2227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTCCTCCGAGAGATCGCACGGCCGCTGATGGCCAGGGTGAAGCAGACGACGGGGATCGTAGGGCTGGACGTGGTCCCCAACGCAAGGGAGGTACTGATCGAGCTCTACTCCAAAACCCTAAAGGAGATCCAGGCCGTCCCCAAGGACGAAGGCTACCGCAAAGCCGTCGAGAGCTTCACTCGGCAGCGCCTCCAGGTCTGCCGCGAAGAGGACTGGGAGGCCATCGAGAAGAGGCTCGGCTGCGGCCAGGTCAGAGGAGCTCATCGAGGAGGCGCTGTTAATGTGTGCTTTCTGGTTTGGACTTGTTTGTGGTTTGCTTATTCGACGAGAAATAGCGATTGGAAAATGCAAATGAGGTTGGAATTTTTTGGGATTAGGTCCGGACTTACAAGTTTTGTGTGGTTATTGAGTTTTTTCGCTTTTCTAGTTACTTATTTTGTGAAGGGAAACTTTGATCAGGATTATGATTTGCCAATGGATCCGATGGCCAGAGTAGAAATCTTAATGTGTGTGAAAGCATGGTGTTTACTAGCCACTGCAACTGTTTCTTCAAAACATGACATTTTGGTTCATCCATTTTCAATTGTTTCCATAATGTTGGAATCTTCTGTTGTCAAAATGTATATTTCTCGTGCTTCCTTCTTACAAATGCTTGTTGAGACAAATGATATAGTTATTGTTTGTCAAAGTACAATTGTATTATCCAGATTCTTTCATTTAACTTCTAATCGTATTATGAGCTCTTTATTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA5

Protein Analysis

252

Amino Acids

28.99

Weight (kDa)

8.85

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETC_C1_NDUFA5	PF04716	22 - 85	3.7e-23	ETC complex I subunit conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	383
AciI	CCGC	4 cut(s)	26, 160, 205, 246
AclWI	GGATC	4 cut(s)	65, 124, 476, 489
AcoI	YGGCCR	4 cut(s)	23, 33, 247, 489
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	2 cut(s)	96, 694
AfiI	CCNNNNNNNGG	2 cut(s)	87, 211
AgsI	TTSAA	2 cut(s)	555, 585
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	4 cut(s)	35, 132, 195, 249
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	4 cut(s)	106, 177, 263, 744
AluI	AGCT	4 cut(s)	106, 177, 263, 744
Alw21I	GWGCWC	3 cut(s)	108, 265, 746
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	4 cut(s)	65, 124, 476, 489
Aor13HI	TCCGGA	1 cut(s)	383
AoxI	GGCC	6 cut(s)	23, 33, 135, 222, 247, 489
ApeKI	GCWGC	2 cut(s)	187, 243
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	2 cut(s)	192, 278
AspS9I	GGNCC	2 cut(s)	76, 381
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	2 cut(s)	76, 381
BalI	TGGCCA	2 cut(s)	35, 491
BamHI	GGATCC	1 cut(s)	481
BanII	GRGCYC	3 cut(s)	108, 265, 746
BauI	CACGAG	1 cut(s)	633
Bbv12I	GWGCWC	3 cut(s)	108, 265, 746
BbvI	GCAGC	2 cut(s)	199, 230
BccI	CCATC	3 cut(s)	25, 233, 481
BceAI	ACGGC	3 cut(s)	38, 122, 152
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	4 cut(s)	37, 134, 197, 251
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	2 cut(s)	428, 533
BfoI	RGCGCY	2 cut(s)	193, 279
BisI	GCNGC	5 cut(s)	26, 188, 205, 244, 247
BlsI	GCNGC	5 cut(s)	27, 189, 206, 245, 248
Bme1390I	CCNGG	4 cut(s)	37, 134, 197, 251
Bme18I	GGWCC	2 cut(s)	76, 381
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	76, 381
BmiI	GGNNCC	2 cut(s)	78, 483
BmrFI	CCNGG	4 cut(s)	37, 134, 197, 251
BmrI	ACTGGG	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	226
BplI	GAGNNNNNCTC	4 cut(s)	95, 127, 166, 198
BpmI	CTGGAG	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	36, 144
BsaWI	WCCGGW	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 211
Bse1I	ACTGG	1 cut(s)	221
BseAI	TCCGGA	1 cut(s)	383
BseBI	CCWGG	4 cut(s)	37, 134, 197, 251
BseDI	CCNNGG	2 cut(s)	36, 144
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	2 cut(s)	87, 211
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	273, 285
BseX3I	CGGCCG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	199, 230
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 491
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	3 cut(s)	108, 265, 746
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	2 cut(s)	62, 125
BslI	CCNNNNNNNGG	2 cut(s)	87, 211
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	2 cut(s)	62, 125
BsnI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 491
Bsp1286I	GDGCHC	3 cut(s)	108, 265, 746
Bsp13I	TCCGGA	1 cut(s)	383
Bsp143I	GATC	6 cut(s)	15, 57, 99, 129, 457, 481
BspACI	CCGC	4 cut(s)	26, 160, 205, 246
BspANI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 491
BspEI	TCCGGA	1 cut(s)	383
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	78, 483
BspPI	GGATC	4 cut(s)	65, 124, 476, 489
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	36, 144
BssMI	GATC	6 cut(s)	15, 57, 99, 129, 457, 481
BssSI	CACGAG	1 cut(s)	633
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	633
Bst2UI	CCWGG	4 cut(s)	37, 134, 197, 251
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	2 cut(s)	204, 227
BstF5I	GGATG	1 cut(s)	574
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	2 cut(s)	193, 279
BstHHI	GCGC	2 cut(s)	192, 278
BstKTI	GATC	6 cut(s)	18, 60, 102, 132, 460, 484
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	6 cut(s)	15, 57, 99, 129, 457, 481
BstMCI	CGRYCG	1 cut(s)	26
BstNI	CCWGG	4 cut(s)	37, 134, 197, 251
BstSCI	CCNGG	4 cut(s)	35, 132, 195, 249
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	199, 230
BstX2I	RGATCY	2 cut(s)	129, 481
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	2 cut(s)	129, 481
BstZI	CGGCCG	1 cut(s)	23
BsuRI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 491
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	574
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	537
CfoI	GCGC	2 cut(s)	192, 278
Cfr13I	GGNCC	2 cut(s)	76, 381
Csp6I	GTAC	2 cut(s)	95, 693
CviAII	CATG	3 cut(s)	522, 560, 756
CviQI	GTAC	2 cut(s)	95, 693
DpnI	GATC	6 cut(s)	17, 59, 101, 131, 459, 483
DpnII	GATC	6 cut(s)	15, 57, 99, 129, 457, 481
EaeI	YGGCCR	4 cut(s)	23, 33, 247, 489
EagI	CGGCCG	1 cut(s)	23
Eam1104I	CTCTTC	2 cut(s)	204, 227
EarI	CTCTTC	2 cut(s)	204, 227
Ecl136II	GAGCTC	3 cut(s)	106, 263, 744
EclXI	CGGCCG	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	3 cut(s)	108, 265, 746
Eco47I	GGWCC	2 cut(s)	76, 381
Eco52I	CGGCCG	1 cut(s)	23
Eco53kI	GAGCTC	3 cut(s)	106, 263, 744
EcoICRI	GAGCTC	3 cut(s)	106, 263, 744
EcoRII	CCWGG	4 cut(s)	35, 132, 195, 249
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	3 cut(s)	108, 265, 746
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	3 cut(s)	525, 563, 759
FaiI	YATR	8 cut(s)	468, 523, 561, 596, 627, 674, 740, 757
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	2 cut(s)	62, 125
FatI	CATG	3 cut(s)	521, 559, 755
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	5 cut(s)	26, 188, 205, 244, 247
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	3 cut(s)	108, 265, 746
Fsp4HI	GCNGC	5 cut(s)	26, 188, 205, 244, 247
FspBI	CTAG	2 cut(s)	428, 533
GlaI	GCGC	2 cut(s)	191, 277
GluI	GCNGC	5 cut(s)	26, 188, 205, 244, 247
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	2 cut(s)	193, 279
HaeIII	GGCC	6 cut(s)	25, 35, 137, 224, 249, 491
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	2 cut(s)	192, 278
Hin1II	CATG	3 cut(s)	525, 563, 759
Hin6I	GCGC	2 cut(s)	190, 276
HinP1I	GCGC	2 cut(s)	190, 276
HinfI	GANTC	2 cut(s)	605, 711
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	3 cut(s)	11, 257, 486
Hpy188III	TCNNGA	5 cut(s)	172, 229, 384, 461, 708
Hpy8I	GTNNAC	1 cut(s)	530
Hpy99I	CGWCG	3 cut(s)	55, 173, 331
HpyAV	CCTTC	3 cut(s)	146, 439, 652
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	352, 542
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	525, 563, 759
HspAI	GCGC	2 cut(s)	190, 276
Kpn2I	TCCGGA	1 cut(s)	383
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	6 cut(s)	15, 57, 99, 129, 457, 481
LmnI	GCTCC	1 cut(s)	260
Lsp1109I	GCAGC	2 cut(s)	199, 230
MaeI	CTAG	2 cut(s)	428, 533
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	6 cut(s)	17, 59, 101, 131, 459, 483
MboI	GATC	6 cut(s)	15, 57, 99, 129, 457, 481
MboII	GAAGA	4 cut(s)	221, 244, 543, 600
MfeI	CAATTG	2 cut(s)	585, 696
MflI	RGATCY	2 cut(s)	129, 481
MhlI	GDGCHC	3 cut(s)	108, 265, 746
MlsI	TGGCCA	2 cut(s)	35, 491
MluCI	AATT	3 cut(s)	365, 585, 696
MluNI	TGGCCA	2 cut(s)	35, 491
MmeI	TCCRAC	2 cut(s)	342, 582
Mox20I	TGGCCA	2 cut(s)	35, 491
MroI	TCCGGA	1 cut(s)	383
MscI	TGGCCA	2 cut(s)	35, 491
MseI	TTAA	3 cut(s)	282, 506, 722
Msp20I	TGGCCA	2 cut(s)	35, 491
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	4 cut(s)	37, 134, 197, 251
MunI	CAATTG	2 cut(s)	585, 696
MvaI	CCWGG	4 cut(s)	37, 134, 197, 251
MvnI	CGCG	1 cut(s)	207
NdeII	GATC	6 cut(s)	15, 57, 99, 129, 457, 481
NlaIII	CATG	3 cut(s)	525, 563, 759
NlaIV	GGNNCC	2 cut(s)	78, 483
NmeAIII	GCCGAG	2 cut(s)	163, 219
PfeI	GAWTC	2 cut(s)	605, 711
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	5 cut(s)	27, 189, 206, 245, 248
Psp124BI	GAGCTC	3 cut(s)	108, 265, 746
Psp6I	CCWGG	4 cut(s)	35, 132, 195, 249
PspGI	CCWGG	4 cut(s)	35, 132, 195, 249
PspN4I	GGNNCC	2 cut(s)	78, 483
PspPI	GGNCC	2 cut(s)	76, 381
PsuI	RGATCY	2 cut(s)	129, 481
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	2 cut(s)	96, 694
RsaNI	GTAC	2 cut(s)	95, 693
SacI	GAGCTC	3 cut(s)	108, 265, 746
SaqAI	TTAA	3 cut(s)	282, 506, 722
SatI	GCNGC	5 cut(s)	26, 188, 205, 244, 247
Sau3AI	GATC	6 cut(s)	15, 57, 99, 129, 457, 481
Sau96I	GGNCC	2 cut(s)	76, 381
ScrFI	CCNGG	4 cut(s)	37, 134, 197, 251
SduI	GDGCHC	3 cut(s)	108, 265, 746
SinI	GGWCC	2 cut(s)	76, 381
Sse9I	AATT	3 cut(s)	365, 585, 696
SsiI	CCGC	4 cut(s)	26, 160, 205, 246
SspMI	CTAG	2 cut(s)	428, 533
SstI	GAGCTC	3 cut(s)	108, 265, 746
StyD4I	CCNGG	4 cut(s)	35, 132, 195, 249
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	5 cut(s)	102, 171, 228, 268, 326
TasI	AATT	3 cut(s)	365, 585, 696
TatI	WGTACW	1 cut(s)	692
TauI	GCSGC	3 cut(s)	28, 207, 249
TfiI	GAWTC	2 cut(s)	605, 711
Tru1I	TTAA	3 cut(s)	282, 506, 722
Tru9I	TTAA	3 cut(s)	282, 506, 722
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	2 cut(s)	187, 243
TspDTI	ATGAA	2 cut(s)	563, 707
TspRI	CASTG	1 cut(s)	544
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	2 cut(s)	76, 381
XapI	RAATTY	1 cut(s)	365
XspI	CTAG	2 cut(s)	428, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.