RchiOBHm_Chr1g0363761

Belongs to the tetraspanin (TM4SF) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
55080649 .. 55081629
981 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGGCAACAACAGTGAGTCAAGACCCAGATTGCTACCGGTGGAACAATGCCCCGAATTTGTTATGCTACGAGTGTGATTCATGCAAGGTAGGAGTGCTTGAAAATATCAAAAGGGACTGGCACAAGCTCTCTGTTCTCAACATGTTGTCCTCATTGGAATATATTCCATTGAATGCTGTGCTTTCCAAAACACAAAAAGAGCTGAAACCGGTTACCCCTATGGCCAGAACCGGATGCCTACAGTCTGACCCAGATGGAATTACCACTGGTGAGTTAATAGAGTACTTATACTATCTGCACCTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.58

Weight (kDa)

5.21

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 141
AgeI ACCGGT 2 cut(s) 36, 208
AgsI TTSAA 2 cut(s) 101, 172
AluBI AGCT 2 cut(s) 127, 202
AluI AGCT 2 cut(s) 127, 202
AoxI GGCC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 55
AsiGI ACCGGT 2 cut(s) 36, 208
Asp700I GAANNNNTTC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 281
BalI TGGCCA 1 cut(s) 224
BccI CCATC 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 239
BmcAI AGTACT 1 cut(s) 284
BmsI GCATC 1 cut(s) 224
BsaWI WCCGGW 3 cut(s) 36, 208, 230
Bse118I RCCGGY 2 cut(s) 36, 208
Bse1I ACTGG 2 cut(s) 122, 271
BseGI GGATG 1 cut(s) 239
BseNI ACTGG 2 cut(s) 122, 271
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 1 cut(s) 224
BshTI ACCGGT 2 cut(s) 36, 208
BsiSI CCGG 3 cut(s) 37, 209, 231
BslFI GGGAC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 224
BspANI GGCC 1 cut(s) 224
BsrFI RCCGGY 2 cut(s) 36, 208
BsrI ACTGG 2 cut(s) 122, 271
BssAI RCCGGY 2 cut(s) 36, 208
Bst4CI ACNGT 2 cut(s) 13, 243
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 145
BstPI GGTNACC 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 239
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 2 cut(s) 18, 264
Cfr10I RCCGGY 2 cut(s) 36, 208
Csp6I GTAC 1 cut(s) 283
CspAI ACCGGT 2 cut(s) 36, 208
CviAII CATG 2 cut(s) 81, 142
CviJI RGCY 3 cut(s) 127, 202, 224
CviKI_1 RGCY 3 cut(s) 127, 202, 224
CviQI GTAC 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 222
Eco91I GGTNACC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 211
FaeI CATG 2 cut(s) 84, 145
FaiI YATR 6 cut(s) 64, 82, 143, 162, 221, 289
FaqI GGGAC 1 cut(s) 128
FatI CATG 2 cut(s) 80, 141
FokI GGATG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 224
HapII CCGG 3 cut(s) 37, 209, 231
Hin1II CATG 2 cut(s) 84, 145
HinfI GANTC 2 cut(s) 16, 77
HpaII CCGG 3 cut(s) 37, 209, 231
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 13, 243
HpyCH4V TGCA 2 cut(s) 84, 298
Hsp92II CATG 2 cut(s) 84, 145
LpnPI CCDG 8 cut(s) 39, 50, 103, 222, 238, 244, 252, 264
LweI GCATC 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 211
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 2 cut(s) 55, 258
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 1 cut(s) 160
Mox20I TGGCCA 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 162
MscI TGGCCA 1 cut(s) 224
MseI TTAA 2 cut(s) 275, 307
Msp20I TGGCCA 1 cut(s) 224
MspI CCGG 3 cut(s) 37, 209, 231
Mva1269I GAATGC 1 cut(s) 178
NlaIII CATG 2 cut(s) 84, 145
NspI RCATGY 1 cut(s) 145
PciI ACATGT 1 cut(s) 141
PctI GAATGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 77
PinAI ACCGGT 2 cut(s) 36, 208
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PscI ACATGT 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 211
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 275, 307
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 1 cut(s) 25
SetI ASST 4 cut(s) 90, 129, 204, 303
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 239
Sse9I AATT 2 cut(s) 55, 258
TaaI ACNGT 2 cut(s) 13, 243
TasI AATT 2 cut(s) 55, 258
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 275, 307
Tru9I TTAA 2 cut(s) 275, 307
TscAI CASTG 2 cut(s) 18, 271
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 2 cut(s) 18, 271
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.