RchiOBHm_Chr1g0364901

3-ketoacyl-CoA synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
55988444 .. 55989753
1310 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 156 bp
ATGATTTGGAACCTTCGAGAATGGCGCTTCATCGGTTCGGCAACACATCATCTCTGTTGGGCTTTGGTACGTTACATGGAGGCTAAGAAGAGGCTTAAGAGAGGTAACAAGATTCTGATGGTGGGCTTTGGGGCCGGTTATGAATATATGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

51

Amino Acids

6.16

Weight (kDa)

10.13

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 69
AflII CTTAAG 1 cut(s) 95
AoxI GGCC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 132
BccI CCATC 1 cut(s) 112
BfoI RGCGCY 1 cut(s) 28
BfrI CTTAAG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 11, 133
Bse118I RCCGGY 1 cut(s) 134
BshFI GGCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 135
BsnI GGCC 1 cut(s) 134
BspANI GGCC 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 11, 133
BspTI CTTAAG 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 83
BstAFI CTTAAG 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 134
CfoI GCGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 68
CviAII CATG 1 cut(s) 76
CviJI RGCY 5 cut(s) 62, 83, 94, 126, 134
CviKI_1 RGCY 5 cut(s) 62, 83, 94, 126, 134
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
FaeI CATG 1 cut(s) 79
FaiI YATR 4 cut(s) 77, 141, 147, 149
FatI CATG 1 cut(s) 75
GlaI GCGC 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 135
HhaI GCGC 1 cut(s) 27
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 1 cut(s) 25
LpnPI CCDG 1 cut(s) 148
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 2 cut(s) 71, 104
MboII GAAGA 1 cut(s) 100
MnlI CCTC 3 cut(s) 73, 84, 95
MseI TTAA 1 cut(s) 96
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 1 cut(s) 135
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 11, 133
PfeI GAWTC 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 11, 133
PspPI GGNCC 1 cut(s) 132
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 132
SetI ASST 3 cut(s) 15, 73, 106
SgeI CNNG 4 cut(s) 29, 88, 121, 147
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
TaiI ACGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 16
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 19, 156
Vha464I CTTAAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.