Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

56281635 .. 56282642

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCACCTCTACAGTCTCACTCTCCAGCGCGCGACGGGCATAGTCTGCGCCATCAGCGGCAACTTCTCCGGCGAAAAGACCCCAGAAATCGCCGTCGCCCGAGGCAAAGTCCTCGACCTTCTCCGCCCCGACGCCGCCGGTAAGATCCAGACTCTCCTCTCCGTTGAAATTTTCGGCGCCATTAGGTCTTTAGCTCCGTTTAGGCTTACCGGCTCCCGAAAAGACTACATTGTCGTCGGCTCCGATTCCGGCCGAATCGTAATACTAGAATACAACAAAGATAAGAATGTATTTAATAAAATTCACCAAGAGACCTTCGGAAAATCCGGGTCTCGCCGGATTGTTCCGGGTCAGTACTTGGCGGTTGACCCGAAAGGCAGGGCTGTTATGGTTGGAGCCTGTGAGAAGCAGAAGCTAGTGTACATTTTGAATAGGGATGTAGCTAACAGGTTGACTATATCGTCGCCGTTGGAGGCACATAAGTCTCATAATATAGTGTTTTCGATTTGTGGGGTTGATTGTGGGTTTGATAATCCTGTATTTGCTGCCATTGAGCTGGATTATTCCGAGTTGGATCAGGATTCGAGTGGGGAGGTGGCTCGGAAGTATGTGACTTTCTATGAGCTTGATTTGGGGCTTAACCATGTGTGTAGGAAGTGGTCTGATCAGGTTGATGATGGGGCGAATTTGCTGGTTATGGTGCCGGGAGGTGGGGATGGGCCGAGTGGAGTGTTGGTTTGTGCAGAAAATTTTGTGATTTATAAGAATCAGGGACAGGGGGATGTGAGGGCTGTGATTCCTAGGCGTGCTGATTTGCCTGCGCAGCGTGGGGTTCTTATAGTTTCGGCAGCTACTTATAAGCTGAAGTCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

291

Amino Acids

31.68

Weight (kDa)

8.65

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	14 - 289	2.1e-85	RSE1/DDB1/CPSF1 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	762, 858
AasI	GACNNNNNNGTC	2 cut(s)	230, 460
Acc16I	TGCGCA	1 cut(s)	822
AccB1I	GGYRCC	2 cut(s)	176, 700
AccII	CGCG	2 cut(s)	30, 32
AciI	CCGC	4 cut(s)	57, 124, 135, 362
AclWI	GGATC	2 cut(s)	139, 582
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	4 cut(s)	168, 300, 685, 748
AcyI	GRCGYC	2 cut(s)	132, 177
AfaI	GTAC	2 cut(s)	356, 422
AfiI	CCNNNNNNNGG	1 cut(s)	710
AgsI	TTSAA	2 cut(s)	167, 430
AluBI	AGCT	7 cut(s)	194, 415, 443, 556, 625, 851, 862
AluI	AGCT	7 cut(s)	194, 415, 443, 556, 625, 851, 862
Alw26I	GTCTC	4 cut(s)	20, 305, 336, 489
AlwI	GGATC	2 cut(s)	139, 582
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	2 cut(s)	250, 719
ApeKI	GCWGC	3 cut(s)	545, 823, 848
ApoI	RAATTY	4 cut(s)	168, 300, 685, 748
AspA2I	CCTAGG	1 cut(s)	800
AspLEI	GCGC	5 cut(s)	30, 32, 50, 179, 823
AspS9I	GGNCC	1 cut(s)	719
AsuC2I	CCSGG	3 cut(s)	328, 348, 705
AsuHPI	GGTGA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	99
AvrII	CCTAGG	1 cut(s)	800
BanI	GGYRCC	2 cut(s)	176, 700
BarI	GAAGNNNNNNTAC	2 cut(s)	404, 436
BbvI	GCAGC	3 cut(s)	532, 835, 860
BccI	CCATC	3 cut(s)	59, 671, 710
BceAI	ACGGC	2 cut(s)	77, 451
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	3 cut(s)	328, 348, 705
BcoDI	GTCTC	4 cut(s)	20, 305, 336, 489
BfaI	CTAG	3 cut(s)	266, 416, 801
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	5 cut(s)	58, 135, 546, 824, 849
BlnI	CCTAGG	1 cut(s)	800
BlsI	GCNGC	5 cut(s)	59, 136, 547, 825, 850
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	3 cut(s)	328, 348, 705
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	719
BmiI	GGNNCC	5 cut(s)	178, 214, 241, 397, 702
BmrFI	CCNGG	3 cut(s)	328, 348, 705
BpmI	CTGGAG	1 cut(s)	8
BpuMI	CCSGG	3 cut(s)	328, 348, 705
BsaHI	GRCGYC	2 cut(s)	132, 177
BsaI	GGTCTC	2 cut(s)	305, 336
BsaJI	CCNNGG	2 cut(s)	100, 800
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse118I	RCCGGY	2 cut(s)	137, 209
BseDI	CCNNGG	2 cut(s)	100, 800
BseGI	GGATG	3 cut(s)	442, 721, 787
BseLI	CCNNNNNNNGG	1 cut(s)	710
BsePI	GCGCGC	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	146
BseX3I	CGGCCG	1 cut(s)	250
BseXI	GCAGC	3 cut(s)	532, 835, 860
BsgI	GTGCAG	1 cut(s)	762
Bsh1236I	CGCG	2 cut(s)	30, 32
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	252, 721
BshNI	GGYRCC	2 cut(s)	176, 700
BsiEI	CGRYCG	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	8 cut(s)	69, 138, 210, 249, 327, 337, 347, 704
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	4 cut(s)	20, 305, 336, 489
BsmFI	GGGAC	1 cut(s)	786
BsnI	GGCC	2 cut(s)	252, 721
Bso31I	GGTCTC	2 cut(s)	305, 336
BsoBI	CYCGRG	1 cut(s)	99
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	144, 574, 664
BspACI	CCGC	4 cut(s)	57, 124, 135, 362
BspANI	GGCC	2 cut(s)	252, 721
BspFNI	CGCG	2 cut(s)	30, 32
BspLI	GGNNCC	5 cut(s)	178, 214, 241, 397, 702
BspPI	GGATC	2 cut(s)	139, 582
BspT107I	GGYRCC	2 cut(s)	176, 700
BspTNI	GGTCTC	2 cut(s)	305, 336
BsrFI	RCCGGY	2 cut(s)	137, 209
BsrGI	TGTACA	1 cut(s)	420
BssAI	RCCGGY	2 cut(s)	137, 209
BssECI	CCNNGG	2 cut(s)	100, 800
BssHII	GCGCGC	1 cut(s)	28
BssMI	GATC	3 cut(s)	144, 574, 664
BssNI	GRCGYC	2 cut(s)	132, 177
BssT1I	CCWWGG	1 cut(s)	800
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	2 cut(s)	132, 177
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	3 cut(s)	30, 807, 819
BstF5I	GGATG	3 cut(s)	442, 721, 787
BstFNI	CGCG	2 cut(s)	30, 32
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	5 cut(s)	30, 32, 50, 179, 823
BstKTI	GATC	3 cut(s)	147, 577, 667
BstMAI	GTCTC	4 cut(s)	20, 305, 336, 489
BstMBI	GATC	3 cut(s)	144, 574, 664
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 45, 54, 823
BstSCI	CCNGG	3 cut(s)	326, 346, 703
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	2 cut(s)	30, 32
BstV1I	GCAGC	3 cut(s)	532, 835, 860
BstX2I	RGATCY	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	144
BstZI	CGGCCG	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	252, 721
BtsCI	GGATG	3 cut(s)	442, 721, 787
Cac8I	GCNNGC	3 cut(s)	30, 807, 819
CfoI	GCGC	5 cut(s)	30, 32, 50, 179, 823
Cfr10I	RCCGGY	2 cut(s)	137, 209
Cfr13I	GGNCC	1 cut(s)	719
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	355, 421
CviAII	CATG	2 cut(s)	644, 871
CviQI	GTAC	2 cut(s)	355, 421
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	3 cut(s)	146, 576, 666
DpnII	GATC	3 cut(s)	144, 574, 664
DrdI	GACNNNNNNGTC	2 cut(s)	230, 460
DseDI	GACNNNNNNGTC	2 cut(s)	230, 460
EaeI	YGGCCR	1 cut(s)	250
EagI	CGGCCG	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	113
EclXI	CGGCCG	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	800
Eco31I	GGTCTC	2 cut(s)	305, 336
Eco52I	CGGCCG	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	800
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	800
FaeI	CATG	2 cut(s)	647, 874
FaqI	GGGAC	1 cut(s)	786
FatI	CATG	2 cut(s)	643, 870
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	5 cut(s)	58, 135, 546, 824, 849
FokI	GGATG	3 cut(s)	449, 728, 794
Fsp4HI	GCNGC	5 cut(s)	58, 135, 546, 824, 849
FspBI	CTAG	3 cut(s)	266, 416, 801
FspI	TGCGCA	1 cut(s)	822
GlaI	GCGC	5 cut(s)	29, 31, 49, 178, 822
GluI	GCNGC	5 cut(s)	58, 135, 546, 824, 849
GsuI	CTGGAG	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	252, 721
HapII	CCGG	8 cut(s)	69, 138, 210, 249, 327, 337, 347, 704
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	5 cut(s)	30, 32, 50, 179, 823
Hin1I	GRCGYC	2 cut(s)	132, 177
Hin1II	CATG	2 cut(s)	647, 874
Hin6I	GCGC	5 cut(s)	28, 30, 48, 177, 821
HinP1I	GCGC	5 cut(s)	28, 30, 48, 177, 821
HincII	GTYRAC	2 cut(s)	367, 453
HindII	GTYRAC	2 cut(s)	367, 453
HinfI	GANTC	6 cut(s)	151, 245, 255, 581, 766, 796
HpaII	CCGG	8 cut(s)	69, 138, 210, 249, 327, 337, 347, 704
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	367, 421, 453
Hpy188I	TCNGA	5 cut(s)	244, 320, 568, 603, 664
Hpy188III	TCNNGA	3 cut(s)	148, 216, 578
Hpy8I	GTNNAC	3 cut(s)	367, 421, 453
Hpy99I	CGWCG	5 cut(s)	37, 98, 134, 239, 466
HpyAV	CCTTC	2 cut(s)	128, 325
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	4, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 45, 54, 823
Hsp92I	GRCGYC	2 cut(s)	132, 177
Hsp92II	CATG	2 cut(s)	647, 874
HspAI	GCGC	5 cut(s)	28, 30, 48, 177, 821
KasI	GGCGCC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	3 cut(s)	144, 574, 664
LmnI	GCTCC	4 cut(s)	199, 218, 245, 395
Lsp1109I	GCAGC	3 cut(s)	532, 835, 860
MaeI	CTAG	3 cut(s)	266, 416, 801
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	3 cut(s)	146, 576, 666
MboI	GATC	3 cut(s)	144, 574, 664
MflI	RGATCY	1 cut(s)	144
MluCI	AATT	4 cut(s)	168, 300, 685, 748
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	3 cut(s)	373, 450, 552
MnlI	CCTC	8 cut(s)	17, 95, 122, 167, 466, 586, 701, 780
MseI	TTAA	2 cut(s)	294, 639
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	8 cut(s)	69, 138, 210, 249, 327, 337, 347, 704
MspR9I	CCNGG	3 cut(s)	328, 348, 705
MvnI	CGCG	2 cut(s)	30, 32
MwoI	GCNNNNNNNGC	4 cut(s)	36, 45, 54, 823
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	3 cut(s)	328, 348, 705
NdeII	GATC	3 cut(s)	144, 574, 664
NlaIII	CATG	2 cut(s)	647, 874
NlaIV	GGNNCC	5 cut(s)	178, 214, 241, 397, 702
NmeAIII	GCCGAG	1 cut(s)	747
NmuCI	GTSAC	1 cut(s)	610
NsbI	TGCGCA	1 cut(s)	822
PauI	GCGCGC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	5 cut(s)	245, 255, 581, 766, 796
PkrI	GCNGC	5 cut(s)	59, 136, 547, 825, 850
PleI	GAGTC	1 cut(s)	145
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	145
PsiI	TTATAA	2 cut(s)	762, 858
PspN4I	GGNNCC	5 cut(s)	178, 214, 241, 397, 702
PspPI	GGNCC	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	144
PteI	GCGCGC	1 cut(s)	28
RsaI	GTAC	2 cut(s)	356, 422
RsaNI	GTAC	2 cut(s)	355, 421
SaqAI	TTAA	2 cut(s)	294, 639
SatI	GCNGC	5 cut(s)	58, 135, 546, 824, 849
Sau3AI	GATC	3 cut(s)	144, 574, 664
Sau96I	GGNCC	1 cut(s)	719
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	3 cut(s)	328, 348, 705
SfcI	CTRYAG	1 cut(s)	10
SfoI	GGCGCC	1 cut(s)	178
Sse9I	AATT	4 cut(s)	168, 300, 685, 748
SsiI	CCGC	4 cut(s)	57, 124, 135, 362
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	3 cut(s)	266, 416, 801
StyD4I	CCNGG	3 cut(s)	326, 346, 703
StyI	CCWWGG	1 cut(s)	800
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	114, 503, 584
TasI	AATT	4 cut(s)	168, 300, 685, 748
TatI	WGTACW	2 cut(s)	354, 420
TauI	GCSGC	2 cut(s)	60, 137
TfiI	GAWTC	5 cut(s)	245, 255, 581, 766, 796
Tru1I	TTAA	2 cut(s)	294, 639
Tru9I	TTAA	2 cut(s)	294, 639
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	3 cut(s)	545, 823, 848
Tsp45I	GTSAC	1 cut(s)	610
TspGWI	ACGGA	2 cut(s)	151, 186
XapI	RAATTY	4 cut(s)	168, 300, 685, 748
XmaJI	CCTAGG	1 cut(s)	800
XspI	CTAG	3 cut(s)	266, 416, 801
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.