RchiOBHm_Chr1g0366251

Protein cornichon homolog 4-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
56879468 .. 56879737
270 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGGAGATGCTATGGACATGGCTTTTGAGTATCTTCTTCATCTTAACTCTCTTATGCCTTGTGGGTTATCAGCTAATGTGCCTAACTGACCTCGAGGACGATTATATCAGCTCATATGATTCATCATCTCTGATAAACAGTACTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTGGTGCGTCATTCTTCTTATAACGAGACATTGGTTTATGCTTCTATTGGCTCTCCCACACCTATATTATAACGTGGCACTTGGTAGATGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.41

Weight (kDa)

4.33

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 84 3e-24 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 194, 243
AbsI CCTCGAGG 1 cut(s) 92
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 2 cut(s) 73, 111
AluI AGCT 2 cut(s) 73, 111
Alw26I GTCTC 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AvaI CYCGRG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 193
BmcAI AGTACT 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 140, 145
BstMAI GTCTC 1 cut(s) 193
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 141
CviAII CATG 1 cut(s) 18
CviJI RGCY 4 cut(s) 22, 73, 111, 224
CviKI_1 RGCY 4 cut(s) 22, 73, 111, 224
CviQI GTAC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 92
FaeI CATG 1 cut(s) 21
FatI CATG 1 cut(s) 17
FauNDI CATATG 1 cut(s) 115
HgaI GACGC 1 cut(s) 169
Hin1II CATG 1 cut(s) 21
HinfI GANTC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 132
HpyCH4III ACNGT 2 cut(s) 140, 145
HpyCH4IV ACGT 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 1 cut(s) 21
LpnPI CCDG 1 cut(s) 165
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 263
MboII GAAGA 3 cut(s) 25, 28, 179
MnlI CCTC 2 cut(s) 88, 101
MseI TTAA 1 cut(s) 44
NdeI CATATG 1 cut(s) 115
NlaIII CATG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 263
PaeR7I CTCGAG 1 cut(s) 92
PfeI GAWTC 1 cut(s) 119
PsiI TTATAA 2 cut(s) 194, 243
PspXI VCTCGAGB 1 cut(s) 92
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 44
ScaI AGTACT 1 cut(s) 142
SetI ASST 5 cut(s) 75, 93, 113, 237, 249
Sfr274I CTCGAG 1 cut(s) 92
SgeI CNNG 9 cut(s) 30, 71, 104, 106, 164, 179, 210, 259, 266
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 140, 145
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 93
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 28, 111
XhoI CTCGAG 1 cut(s) 92
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.