Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

58417264 .. 58420281

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCAATTTAAGTTTCAGGTTTTATGGAAGACGATGCATATGATATATCTTGCACTCTTGATACCACTTGATGCTTTAATTTCTAACAAGCAGTCTTCATGCAGCCTCCATGGCTTGATACGCGGTGAAAACATGGAGCTTGGTGTCAAGTATGTTGTGGAACTTGCCAGGGCCTTGGGTTCAATGCCTGGAGTTTATCGCGAGCTTGGGGAGAGTACTGGGGCTTATATAGTGCGTATACCATTTGGCCCAAAAGATAAATACGTTCCCAAAGAACTCCTTTGGCCACACATTCCTGAGTTTGTAGATGGAGCACTTAACCATATTATACAGTTGTCCAAAGCTCTTGGAGAGCAAATTGGAGGTGGGGAACCGGTGTGGCCGGTGGCAATTCATGGACACTATGCAGATGCAGGTGACTCTGCTGCTCTTCTTTCTGGAGCCTTGAATATCCCAATGTTATTTACTGGTCACTCACTTGGAAGAGATAAGCTTGAGCAACTTTTGAAACAAGGACGCCAATCAAGAGAAGAAATAAATACGACATACAAAATTATGAGAAGGATAGAAGCAGAGGAACTATCACTTGACGCCTCTGAGATTGTTATAACCAGCACTAGACAGGAAATAGACTCACAATGGTGCTTGTATGATGGCTTTGATCCAATACTAGAACGTAAACTGCGAGCAAGAATAAAAAGGGGCGTTAGCTGTCATGGCAGGTTTATGCCTCGCACGGTTGTAATACCTCCTGGAATGGAATTTCATCATATTATTCCACCTGCAGATGGTGATGCAGATGGGGAAGGGGAAAGAAATGATGATGGTACTGCTAATCCTGACCTGCCAATTTGGTCAGAGATTATGCGTTTCTTTACCAACCCGCGCAAGCCTATGATACTTGCTCTTGCCAGGGCAGATCCTAAGAAGAATATTACGACTTTAGTTAAAGCATTTGGAGAGTGTCGCCCTTTGAGGGATCTTTCTAACCTCGCATTAATTATGGGAAACCGCGATGATATTGATGAAATGTCGAGCACAAATGCCTCTGTGCTTCTTTCTATTTTAAAGCTGATTGACAGATATGATCTGTATGGTCATGTGGCATATCCGAAACACCACAAGCAGTCTGATGTTCCTGACATCTATCGTCTAGCAGCAAAAACAAAGGAAAAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008194 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0035251 GO:0043062 GO:0044085 GO:0044464 GO:0045229 GO:0046524 GO:0046527 GO:0046903 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0071836 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

393

Amino Acids

44.18

Weight (kDa)

6.68

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AarI	CACCTGC	2 cut(s)	404, 790
Acc36I	ACCTGC	4 cut(s)	404, 711, 790, 852
AccI	GTMKAC	1 cut(s)	238
AccII	CGCG	4 cut(s)	123, 201, 886, 1014
AciI	CCGC	3 cut(s)	123, 884, 1012
AclWI	GGATC	3 cut(s)	656, 914, 987
AcoI	YGGCCR	2 cut(s)	284, 380
AcsI	RAATTY	1 cut(s)	761
AcyI	GRCGYC	2 cut(s)	517, 591
AfaI	GTAC	2 cut(s)	217, 829
AfiI	CCNNNNNNNGG	2 cut(s)	788, 976
AgeI	ACCGGT	1 cut(s)	373
AgsI	TTSAA	3 cut(s)	183, 448, 508
AjnI	CCWGG	4 cut(s)	167, 187, 751, 911
AleI	CACNNNNGTG	1 cut(s)	640
AluBI	AGCT	6 cut(s)	139, 205, 344, 493, 711, 1072
AluI	AGCT	6 cut(s)	139, 205, 344, 493, 711, 1072
Alw21I	GWGCWC	2 cut(s)	316, 1040
AlwI	GGATC	3 cut(s)	656, 914, 987
AoxI	GGCC	4 cut(s)	171, 247, 284, 380
ApeKI	GCWGC	3 cut(s)	102, 425, 1157
ApoI	RAATTY	1 cut(s)	761
AseI	ATTAAT	1 cut(s)	998
AsiGI	ACCGGT	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	2 cut(s)	171, 248
AsuHPI	GGTGA	3 cut(s)	137, 428, 803
BalI	TGGCCA	1 cut(s)	286
BbsI	GAAGAC	2 cut(s)	35, 87
Bbv12I	GWGCWC	2 cut(s)	316, 1040
BbvI	GCAGC	3 cut(s)	114, 412, 1169
BccI	CCATC	5 cut(s)	302, 647, 782, 794, 818
BciT130I	CCWGG	4 cut(s)	169, 189, 753, 913
BfaI	CTAG	3 cut(s)	618, 671, 1154
BfmI	CTRYAG	1 cut(s)	783
BfuAI	ACCTGC	4 cut(s)	404, 711, 790, 852
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	3 cut(s)	103, 426, 1158
BlsI	GCNGC	3 cut(s)	104, 427, 1159
BmcAI	AGTACT	1 cut(s)	217
Bme1390I	CCNGG	4 cut(s)	169, 189, 753, 913
BmgT120I	GGNCC	2 cut(s)	171, 248
BmiI	GGNNCC	2 cut(s)	372, 442
BmrFI	CCNGG	4 cut(s)	169, 189, 753, 913
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	4 cut(s)	24, 61, 400, 784
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	35, 87
BpmI	CTGGAG	2 cut(s)	210, 459
BpuEI	CTTGAG	1 cut(s)	515
BsaHI	GRCGYC	2 cut(s)	517, 591
BsaJI	CCNNGG	4 cut(s)	109, 168, 174, 912
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	2 cut(s)	788, 976
Bse118I	RCCGGY	2 cut(s)	373, 382
Bse1I	ACTGG	2 cut(s)	223, 472
BseBI	CCWGG	4 cut(s)	169, 189, 753, 913
BseDI	CCNNGG	4 cut(s)	109, 168, 174, 912
BseLI	CCNNNNNNNGG	2 cut(s)	788, 976
BseMII	CTCAG	2 cut(s)	288, 588
BseNI	ACTGG	2 cut(s)	223, 472
BseXI	GCAGC	3 cut(s)	114, 412, 1169
Bsh1236I	CGCG	4 cut(s)	123, 201, 886, 1014
BshFI	GGCC	4 cut(s)	173, 249, 286, 382
BshTI	ACCGGT	1 cut(s)	373
BsiHKAI	GWGCWC	2 cut(s)	316, 1040
BsiSI	CCGG	2 cut(s)	374, 383
BslI	CCNNNNNNNGG	2 cut(s)	788, 976
BsnI	GGCC	4 cut(s)	173, 249, 286, 382
Bsp1286I	GDGCHC	2 cut(s)	316, 1040
Bsp143I	GATC	4 cut(s)	661, 919, 979, 1087
Bsp19I	CCATGG	1 cut(s)	109
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	3 cut(s)	123, 884, 1012
BspANI	GGCC	4 cut(s)	173, 249, 286, 382
BspCNI	CTCAG	2 cut(s)	289, 589
BspFNI	CGCG	4 cut(s)	123, 201, 886, 1014
BspLI	GGNNCC	2 cut(s)	372, 442
BspMAI	CTGCAG	1 cut(s)	787
BspMI	ACCTGC	4 cut(s)	404, 711, 790, 852
BspPI	GGATC	3 cut(s)	656, 914, 987
BspQI	GCTCTTC	1 cut(s)	435
BsrFI	RCCGGY	2 cut(s)	373, 382
BsrI	ACTGG	2 cut(s)	223, 472
BssAI	RCCGGY	2 cut(s)	373, 382
BssECI	CCNNGG	4 cut(s)	109, 168, 174, 912
BssMI	GATC	4 cut(s)	661, 919, 979, 1087
BssNAI	GTATAC	1 cut(s)	239
BssNI	GRCGYC	2 cut(s)	517, 591
BssT1I	CCWWGG	2 cut(s)	109, 174
Bst1107I	GTATAC	1 cut(s)	239
Bst2UI	CCWGG	4 cut(s)	169, 189, 753, 913
Bst4CI	ACNGT	2 cut(s)	333, 739
Bst6I	CTCTTC	2 cut(s)	435, 478
BstACI	GRCGYC	2 cut(s)	517, 591
BstC8I	GCNNGC	3 cut(s)	203, 687, 890
BstDEI	CTNAG	3 cut(s)	297, 597, 924
BstDSI	CCRYGG	1 cut(s)	109
BstFNI	CGCG	4 cut(s)	123, 201, 886, 1014
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	4 cut(s)	664, 922, 982, 1090
BstMBI	GATC	4 cut(s)	661, 919, 979, 1087
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 120, 717
BstNI	CCWGG	4 cut(s)	169, 189, 753, 913
BstSCI	CCNGG	4 cut(s)	167, 187, 751, 911
BstSFI	CTRYAG	1 cut(s)	783
BstUI	CGCG	4 cut(s)	123, 201, 886, 1014
BstV1I	GCAGC	3 cut(s)	114, 412, 1169
BstV2I	GAAGAC	2 cut(s)	35, 87
BstX2I	RGATCY	2 cut(s)	919, 979
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	2 cut(s)	919, 979
BstZ17I	GTATAC	1 cut(s)	239
BsuRI	GGCC	4 cut(s)	173, 249, 286, 382
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	1029
BtuMI	TCGCGA	1 cut(s)	201
BveI	ACCTGC	4 cut(s)	404, 711, 790, 852
Cac8I	GCNNGC	3 cut(s)	203, 687, 890
CfoI	GCGC	1 cut(s)	888
Cfr10I	RCCGGY	2 cut(s)	373, 382
Cfr13I	GGNCC	2 cut(s)	171, 248
CseI	GACGC	2 cut(s)	525, 599
Csp6I	GTAC	2 cut(s)	216, 828
CspAI	ACCGGT	1 cut(s)	373
CviAII	CATG	6 cut(s)	99, 110, 133, 395, 716, 1100
CviQI	GTAC	2 cut(s)	216, 828
DdeI	CTNAG	3 cut(s)	297, 597, 924
DpnI	GATC	4 cut(s)	663, 921, 981, 1089
DpnII	GATC	4 cut(s)	661, 919, 979, 1087
DraI	TTTAAA	1 cut(s)	1068
EaeI	YGGCCR	2 cut(s)	284, 380
Eam1104I	CTCTTC	2 cut(s)	435, 478
EarI	CTCTTC	2 cut(s)	435, 478
Eco130I	CCWWGG	2 cut(s)	109, 174
EcoO109I	RGGNCCY	1 cut(s)	171
EcoRII	CCWGG	4 cut(s)	167, 187, 751, 911
EcoT14I	CCWWGG	2 cut(s)	109, 174
EcoT22I	ATGCAT	1 cut(s)	39
ErhI	CCWWGG	2 cut(s)	109, 174
FaeI	CATG	6 cut(s)	102, 113, 136, 398, 719, 1103
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	6 cut(s)	98, 109, 132, 394, 715, 1099
FauI	CCCGC	1 cut(s)	891
FauNDI	CATATG	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	103, 426, 1158
Fsp4HI	GCNGC	3 cut(s)	103, 426, 1158
FspBI	CTAG	3 cut(s)	618, 671, 1154
GlaI	GCGC	1 cut(s)	887
GluI	GCNGC	3 cut(s)	103, 426, 1158
GsuI	CTGGAG	2 cut(s)	210, 459
HaeIII	GGCC	4 cut(s)	173, 249, 286, 382
HapII	CCGG	2 cut(s)	374, 383
HgaI	GACGC	2 cut(s)	525, 599
HhaI	GCGC	1 cut(s)	888
Hin1I	GRCGYC	2 cut(s)	517, 591
Hin1II	CATG	6 cut(s)	102, 113, 136, 398, 719, 1103
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	2 cut(s)	419, 632
HpaII	CCGG	2 cut(s)	374, 383
HphI	GGTGA	3 cut(s)	137, 428, 803
Hpy166II	GTNNAC	2 cut(s)	239, 680
Hpy188I	TCNGA	4 cut(s)	598, 859, 1113, 1132
Hpy188III	TCNNGA	7 cut(s)	58, 200, 296, 438, 525, 839, 1139
Hpy8I	GTNNAC	2 cut(s)	239, 680
HpyAV	CCTTC	2 cut(s)	555, 800
HpyCH4III	ACNGT	2 cut(s)	333, 739
HpyCH4IV	ACGT	2 cut(s)	264, 676
HpyCH4V	TGCA	8 cut(s)	4, 37, 53, 102, 407, 413, 785, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 120, 717
HpyF3I	CTNAG	3 cut(s)	297, 597, 924
HpySE526I	ACGT	2 cut(s)	264, 676
Hsp92I	GRCGYC	2 cut(s)	517, 591
Hsp92II	CATG	6 cut(s)	102, 113, 136, 398, 719, 1103
HspAI	GCGC	1 cut(s)	886
Kzo9I	GATC	4 cut(s)	661, 919, 979, 1087
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	3 cut(s)	136, 311, 440
Lsp1109I	GCAGC	3 cut(s)	114, 412, 1169
LweI	GCATC	4 cut(s)	24, 61, 400, 784
MaeI	CTAG	3 cut(s)	618, 671, 1154
MaeII	ACGT	2 cut(s)	264, 676
MaeIII	GTNAC	2 cut(s)	416, 470
MalI	GATC	4 cut(s)	663, 921, 981, 1089
MboI	GATC	4 cut(s)	661, 919, 979, 1087
MboII	GAAGA	6 cut(s)	40, 87, 422, 495, 542, 940
MflI	RGATCY	2 cut(s)	919, 979
MhlI	GDGCHC	2 cut(s)	316, 1040
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	8 cut(s)	5, 78, 357, 390, 552, 761, 849, 999
MluNI	TGGCCA	1 cut(s)	286
MlyI	GAGTC	2 cut(s)	413, 626
MnlI	CCTC	9 cut(s)	116, 356, 568, 604, 741, 759, 969, 1001, 1057
Mox20I	TGGCCA	1 cut(s)	286
Mph1103I	ATGCAT	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	6 cut(s)	9, 77, 318, 948, 998, 1067
MslI	CAYNNNNRTG	1 cut(s)	640
Msp20I	TGGCCA	1 cut(s)	286
MspI	CCGG	2 cut(s)	374, 383
MspR9I	CCNGG	4 cut(s)	169, 189, 753, 913
MvaI	CCWGG	4 cut(s)	169, 189, 753, 913
MvnI	CGCG	4 cut(s)	123, 201, 886, 1014
MwoI	GCNNNNNNNGC	3 cut(s)	111, 120, 717
NcoI	CCATGG	1 cut(s)	109
NdeI	CATATG	1 cut(s)	39
NdeII	GATC	4 cut(s)	661, 919, 979, 1087
NlaIII	CATG	6 cut(s)	102, 113, 136, 398, 719, 1103
NlaIV	GGNNCC	2 cut(s)	372, 442
NmuCI	GTSAC	2 cut(s)	416, 470
NruI	TCGCGA	1 cut(s)	201
NsiI	ATGCAT	1 cut(s)	39
OliI	CACNNNNGTG	1 cut(s)	640
PaqCI	CACCTGC	2 cut(s)	404, 790
PciSI	GCTCTTC	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	682
PfoI	TCCNGGA	1 cut(s)	751
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	104, 427, 1159
PleI	GAGTC	2 cut(s)	413, 626
PpsI	GAGTC	2 cut(s)	413, 626
PshBI	ATTAAT	1 cut(s)	998
PsiI	TTATAA	1 cut(s)	608
Psp6I	CCWGG	4 cut(s)	167, 187, 751, 911
PspGI	CCWGG	4 cut(s)	167, 187, 751, 911
PspN4I	GGNNCC	2 cut(s)	372, 442
PspPI	GGNCC	2 cut(s)	171, 248
PstI	CTGCAG	1 cut(s)	787
PsuI	RGATCY	2 cut(s)	919, 979
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	2 cut(s)	217, 829
RsaNI	GTAC	2 cut(s)	216, 828
RseI	CAYNNNNRTG	1 cut(s)	640
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	6 cut(s)	9, 77, 318, 948, 998, 1067
SatI	GCNGC	3 cut(s)	103, 426, 1158
Sau3AI	GATC	4 cut(s)	661, 919, 979, 1087
Sau96I	GGNCC	2 cut(s)	171, 248
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	2 cut(s)	413, 626
ScrFI	CCNGG	4 cut(s)	169, 189, 753, 913
SduI	GDGCHC	2 cut(s)	316, 1040
SfaNI	GCATC	4 cut(s)	24, 61, 400, 784
SfcI	CTRYAG	1 cut(s)	783
SmiMI	CAYNNNNRTG	1 cut(s)	640
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	8 cut(s)	5, 78, 357, 390, 552, 761, 849, 999
SsiI	CCGC	3 cut(s)	123, 884, 1012
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	3 cut(s)	618, 671, 1154
StyD4I	CCNGG	4 cut(s)	167, 187, 751, 911
StyI	CCWWGG	2 cut(s)	109, 174
TaaI	ACNGT	2 cut(s)	333, 739
TaiI	ACGT	2 cut(s)	267, 679
TaqI	TCGA	1 cut(s)	1034
TasI	AATT	8 cut(s)	5, 78, 357, 390, 552, 761, 849, 999
TatI	WGTACW	1 cut(s)	215
Tru1I	TTAA	6 cut(s)	9, 77, 318, 948, 998, 1067
Tru9I	TTAA	6 cut(s)	9, 77, 318, 948, 998, 1067
TseFI	GTSAC	2 cut(s)	416, 470
TseI	GCWGC	3 cut(s)	102, 425, 1157
Tsp45I	GTSAC	2 cut(s)	416, 470
TspDTI	ATGAA	4 cut(s)	87, 383, 755, 1041
VspI	ATTAAT	1 cut(s)	998
XapI	RAATTY	1 cut(s)	761
XmiI	GTMKAC	1 cut(s)	238
XspI	CTAG	3 cut(s)	618, 671, 1154
ZrmI	AGTACT	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.