Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

58633676 .. 58634827

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGCTTCACCTGTCTAAAATGATTATCAGAGGGAGAGGACAGGTTGTTGATGGTGATGTTACTTACAGCCACAAGGACCTCCTAGTTGAGACAGATGGAGGGAGACAAGAAAAGAGAAAGGGAGAGAGTATTGAGTCAATATCTTGCCTATTCAATGACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

54

Amino Acids

6.08

Weight (kDa)

6.03

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	83, 97
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	76
BccI	CCATC	2 cut(s)	44, 89
BcoDI	GTCTC	2 cut(s)	83, 97
BfaI	CTAG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	83, 97
BstMAI	GTCTC	2 cut(s)	83, 97
Cfr13I	GGNCC	1 cut(s)	76
CviJI	RGCY	1 cut(s)	69
CviKI_1	RGCY	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	76
FspBI	CTAG	1 cut(s)	83
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	29
LpnPI	CCDG	2 cut(s)	23, 26
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	4 cut(s)	23, 29, 89, 92
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	76
PspPPI	RGGWCCY	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	143
SetI	ASST	3 cut(s)	12, 45, 81
SgeI	CNNG	6 cut(s)	22, 53, 85, 95, 119, 156
SinI	GGWCC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	76
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.