RchiOBHm_Chr1g0369191

Ribosomal protein L35Ae

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
59098599 .. 59099648
1050 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGGCACAGATTGCAATATTGTCTGCTTCAGCAAGTCTTATACCCTTCAATAGTGGTGGTGCAAAGCAATTGAGCAAGTCATTGCAGCTTTTTTCTTCAAGAAGATGTACAACTTCTACTACTACTAGTTCACCATCATTAACCACAATAAGGTTTAGAAGCAAGAGAATTGGGAACCTTGAATTTTGGGCAAGAGCAGCAGCTAGTCATGGAAGTTTGGGGGAGGTAGATGAGTGGACATTGCCAGATAACAAGGTTGGACTTTCTTCTGAATCTTCATATAAAACTCTCTCTTTGAAGTTCTTACCAGCAATGCTAGTTGAATTGGACCACTAA

Protein Analysis

111

Amino Acids

12.01

Weight (kDa)

9.65

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 5 cut(s) 49, 99, 182, 298, 323
AhlI ACTAGT 1 cut(s) 125
AluBI AGCT 2 cut(s) 88, 203
AluI AGCT 2 cut(s) 88, 203
ApeKI GCWGC 3 cut(s) 85, 197, 200
ApoI RAATTY 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 328
BbvI GCAGC 3 cut(s) 97, 209, 212
BccI CCATC 1 cut(s) 142
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 3 cut(s) 126, 204, 317
BisI GCNGC 3 cut(s) 86, 198, 201
BlsI GCNGC 3 cut(s) 87, 199, 202
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse3DI GCAATG 3 cut(s) 80, 239, 318
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 3 cut(s) 80, 239, 318
BseXI GCAGC 3 cut(s) 97, 209, 212
BslI CCNNNNNNNGG 1 cut(s) 150
Bsp1407I TGTACA 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 176
BsrDI GCAATG 3 cut(s) 80, 239, 318
BsrGI TGTACA 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 107
BstMWI GCNNNNNNNGC 2 cut(s) 11, 197
BstV1I GCAGC 3 cut(s) 97, 209, 212
Cfr13I GGNCC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 108
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 1 cut(s) 209
CviJI RGCY 2 cut(s) 88, 203
CviKI_1 RGCY 2 cut(s) 88, 203
CviQI GTAC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 12
FaeI CATG 1 cut(s) 212
FaiI YATR 4 cut(s) 41, 210, 280, 282
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 86, 198, 201
Fsp4HI GCNGC 3 cut(s) 86, 198, 201
FspBI CTAG 3 cut(s) 126, 204, 317
GluI GCNGC 3 cut(s) 86, 198, 201
Hin1II CATG 1 cut(s) 212
HinfI GANTC 1 cut(s) 272
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 2 cut(s) 131, 237
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 1 cut(s) 99
Hpy8I GTNNAC 2 cut(s) 131, 237
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 14, 62, 85
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 197
Hsp92II CATG 1 cut(s) 212
LpnPI CCDG 2 cut(s) 258, 321
Lsp1109I GCAGC 3 cut(s) 97, 209, 212
MaeI CTAG 3 cut(s) 126, 204, 317
MboII GAAGA 4 cut(s) 87, 114, 258, 267
MfeI CAATTG 1 cut(s) 68
MluCI AATT 4 cut(s) 68, 168, 182, 323
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 1 cut(s) 217
MseI TTAA 1 cut(s) 140
MunI CAATTG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 11, 197
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 3 cut(s) 87, 199, 202
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 328
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 3 cut(s) 86, 198, 201
Sau96I GGNCC 1 cut(s) 328
SetI ASST 6 cut(s) 90, 155, 180, 205, 228, 258
SinI GGWCC 1 cut(s) 328
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 4 cut(s) 68, 168, 182, 323
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 126, 204, 317
TasI AATT 4 cut(s) 68, 168, 182, 323
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 3 cut(s) 85, 197, 200
TspDTI ATGAA 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 1 cut(s) 182
XspI CTAG 3 cut(s) 126, 204, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.