RchiOBHm_Chr1g0372401

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
61107983 .. 61109267
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGCGACGTTTTGTGTTTAGTTTGATGAACCAAGTGAATATGTCCCTTTGTCCACTGTATTCACAGATTCGAAGAAGCATGGCCAAACTTGAGCTCTACCGGAAGTTTACCAATTCCCTTGCAGTATCAGTATTGCTGTCTGTCGCTTGGATTGGTTATGAGTTGTATTTTAATGCGAGTGACCCGTTGAGTGAATTGTGGCGAAGAGCCTGGATCATCCCAGCTTTCTGGGTTTTGCTTGCATACTTTCTGTTGGTAGTTATATGTGTTCTCTGGGCTCCATCTCACAACCCAACCGGATATGCATACTCCGAGGAGACTGTGGATGACTTTGATGAGGAGGGTATCTCGCTCACTAGTGGAAGCGGAGTTAAGGTGGCCGGCATTGACTTGGCCAGCAAGCTAGAAAGAAAGGAAAGGAAGCTATCAAGTTCAGCAGATCACCATGTGTTTCTTGGGGAAGGTGAGGAGGACAAGAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

161

Amino Acids

18.4

Weight (kDa)

5.66

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 22 - 98 6.9e-26 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 366
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 3 cut(s) 81, 378, 393
AdeI CACNNNGTG 1 cut(s) 448
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 4 cut(s) 94, 224, 403, 424
AluI AGCT 4 cut(s) 94, 224, 403, 424
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 1 cut(s) 221
AoxI GGCC 3 cut(s) 81, 378, 393
AsuHPI GGTGA 2 cut(s) 434, 476
AsuII TTCGAA 1 cut(s) 70
BalI TGGCCA 2 cut(s) 83, 395
BanII GRGCYC 2 cut(s) 96, 280
Bbv12I GWGCWC 1 cut(s) 96
BccI CCATC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 311
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 2 cut(s) 357, 404
Bme1390I CCNGG 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 332, 364
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 312
BsaWI WCCGGW 2 cut(s) 99, 296
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bse118I RCCGGY 1 cut(s) 380
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 216, 331
BseRI GAGGAG 3 cut(s) 329, 353, 482
BseYI CCCAGC 1 cut(s) 220
BshFI GGCC 3 cut(s) 83, 380, 395
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 3 cut(s) 100, 297, 381
BslFI GGGAC 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 3 cut(s) 83, 380, 395
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 96, 280
Bsp143I GATC 2 cut(s) 213, 439
BspACI CCGC 1 cut(s) 366
BspANI GGCC 3 cut(s) 83, 380, 395
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 199
BspT104I TTCGAA 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 2 cut(s) 213, 439
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 2 cut(s) 57, 322
Bst6I CTCTTC 1 cut(s) 199
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 4 cut(s) 240, 382, 397, 401
BstF5I GGATG 2 cut(s) 216, 331
BstKTI GATC 2 cut(s) 216, 442
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 2 cut(s) 213, 439
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BstXI CCANNNNNNTGG 1 cut(s) 228
BsuRI GGCC 3 cut(s) 83, 380, 395
BtsCI GGATG 2 cut(s) 216, 331
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 4 cut(s) 240, 382, 397, 401
Cfr10I RCCGGY 1 cut(s) 380
CviAII CATG 2 cut(s) 79, 446
CviJI RGCY 9 cut(s) 83, 94, 209, 224, 278, 380, 395, 403, 424
CviKI_1 RGCY 9 cut(s) 83, 94, 209, 224, 278, 380, 395, 403, 424
DpnI GATC 2 cut(s) 215, 441
DpnII GATC 2 cut(s) 213, 439
DraIII CACNNNGTG 1 cut(s) 448
EaeI YGGCCR 3 cut(s) 81, 378, 393
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 2 cut(s) 96, 280
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 209
EcoT22I ATGCAT 1 cut(s) 307
EcoT38I GRGCYC 2 cut(s) 96, 280
FaeI CATG 2 cut(s) 82, 449
FaiI YATR 9 cut(s) 41, 80, 159, 244, 263, 265, 303, 307, 447
FaqI GGGAC 1 cut(s) 28
FatI CATG 2 cut(s) 78, 445
FokI GGATG 2 cut(s) 203, 338
FriOI GRGCYC 2 cut(s) 96, 280
FspBI CTAG 2 cut(s) 357, 404
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 3 cut(s) 83, 380, 395
HapII CCGG 3 cut(s) 100, 297, 381
Hin1II CATG 2 cut(s) 82, 449
HinfI GANTC 1 cut(s) 67
HpaII CCGG 3 cut(s) 100, 297, 381
HphI GGTGA 2 cut(s) 434, 476
Hpy166II GTNNAC 2 cut(s) 53, 108
Hpy188I TCNGA 1 cut(s) 313
Hpy8I GTNNAC 2 cut(s) 53, 108
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 455
HpyCH4III ACNGT 2 cut(s) 57, 322
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 3 cut(s) 122, 242, 305
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 2 cut(s) 82, 449
KroI GCCGGC 1 cut(s) 380
KroNI GCCGGC 1 cut(s) 382
Kzo9I GATC 2 cut(s) 213, 439
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 9 cut(s) 113, 196, 214, 223, 234, 259, 310, 394, 409
MaeI CTAG 2 cut(s) 357, 404
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 215, 441
MboI GATC 2 cut(s) 213, 439
MboII GAAGA 2 cut(s) 84, 216
MhlI GDGCHC 2 cut(s) 96, 280
MlsI TGGCCA 2 cut(s) 83, 395
MluCI AATT 2 cut(s) 112, 194
MluNI TGGCCA 2 cut(s) 83, 395
MnlI CCTC 5 cut(s) 307, 331, 334, 460, 463
Mox20I TGGCCA 2 cut(s) 83, 395
Mph1103I ATGCAT 1 cut(s) 307
MroNI GCCGGC 1 cut(s) 380
MscI TGGCCA 2 cut(s) 83, 395
MseI TTAA 2 cut(s) 171, 372
Msp20I TGGCCA 2 cut(s) 83, 395
MspI CCGG 3 cut(s) 100, 297, 381
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
NaeI GCCGGC 1 cut(s) 382
NdeII GATC 2 cut(s) 213, 439
NgoMIV GCCGGC 1 cut(s) 380
NlaIII CATG 2 cut(s) 82, 449
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 307
NspV TTCGAA 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 209
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 279
SacI GAGCTC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 171, 372
Sau3AI GATC 2 cut(s) 213, 439
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 2 cut(s) 96, 280
SetI ASST 7 cut(s) 10, 96, 226, 378, 405, 426, 466
SfuI TTCGAA 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 2 cut(s) 112, 194
SsiI CCGC 1 cut(s) 366
SspMI CTAG 2 cut(s) 357, 404
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 2 cut(s) 57, 322
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 70
TasI AATT 2 cut(s) 112, 194
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 2 cut(s) 171, 372
Tru9I TTAA 2 cut(s) 171, 372
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 41
TspRI CASTG 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XspI CTAG 2 cut(s) 357, 404
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.