Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

62451701 .. 62451949

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTGTATGCTCAAGCTAAAGACATCAAGAAAGGGGACAGAATCGCCAGAAGGGGAAGTTTCTTCTTCCTCTAAGAAGAAGTACAAGCAACAACATAAGGTGACACTTTCGGGGTTGCTCAACATAATTGATGGTCTGTGGTCAAGCTGTGGTCATCAAAGACTTATTATATTCACCACCAACTACAAGCTCCAAGCTTGGAGTGAGCACGAACCCCCACAGTTCGGCTTAATTTGGTCTCCCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0000304 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007584 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009991 GO:0010033 GO:0010035 GO:0010154 GO:0010431 GO:0012505 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0021700 GO:0022414 GO:0030054 GO:0031667 GO:0032501 GO:0032502 GO:0032504 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0061458 GO:0071695 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

82

Amino Acids

9.33

Weight (kDa)

9.47

Isoelectric Point (pI)

63.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	224
AluBI	AGCT	4 cut(s)	16, 147, 190, 197
AluI	AGCT	4 cut(s)	16, 147, 190, 197
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	112, 166
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	49
Bso31I	GGTCTC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	5 cut(s)	16, 147, 190, 197, 228
CviKI_1	RGCY	5 cut(s)	16, 147, 190, 197, 228
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	243
FaiI	YATR	5 cut(s)	8, 96, 125, 170, 247
FaqI	GGGAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	1 cut(s)	41
HphI	GGTGA	2 cut(s)	112, 166
Hpy188III	TCNNGA	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	222
HpyF3I	CTNAG	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	3 cut(s)	54, 57, 88
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	2 cut(s)	126, 231
MnlI	CCTC	1 cut(s)	79
MseI	TTAA	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	5 cut(s)	18, 102, 149, 192, 199
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	126, 231
TaaI	ACNGT	1 cut(s)	222
TasI	AATT	2 cut(s)	126, 231
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.