RchiOBHm_Chr1g0375161

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
62692741 .. 62693010
270 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGAAGGCGTGCACCTCAATATCACTCAAGCATATGGGATCGATCTCTGTCGAAACAGTTTTCACTTCAATAGTAACACGTCCACATTACAACGGGATTGCCATTTTGAATTCTTATTCGCCGAACCATTTTGAGGGTGGGAATTGGAATGAAAGTGGAACATGCTCTGGAAATGTGATGCCTATTGGTGATGGACAGTTAGTGGAAAATAAAGACAAGAAGAGTATGCATGAAAAACAAGTAATGATGGGGTTTAAGAGGTGCGGTTAA

Protein Analysis

89

Amino Acids

9.75

Weight (kDa)

8.52

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 5 - 80 6.5e-09 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 264
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 2 cut(s) 69, 109
AjiI CACGTC 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 14
Alw44I GTGCAC 1 cut(s) 10
AlwI GGATC 1 cut(s) 46
ApaLI GTGCAC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 14
BccI CCATC 2 cut(s) 185, 241
BmgBI CACGTC 1 cut(s) 80
BmsI GCATC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseCI ATCGAT 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 2 cut(s) 38, 42
BspACI CCGC 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 41
BspPI GGATC 1 cut(s) 46
BssMI GATC 2 cut(s) 38, 42
Bst4CI ACNGT 2 cut(s) 58, 198
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 10
BstKTI GATC 2 cut(s) 41, 45
BstMBI GATC 2 cut(s) 38, 42
BstNSI RCATGY 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 14
Bsu15I ATCGAT 1 cut(s) 41
BsuTUI ATCGAT 1 cut(s) 41
BtrI CACGTC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 10
ClaI ATCGAT 1 cut(s) 41
CviAII CATG 2 cut(s) 162, 230
DpnI GATC 2 cut(s) 40, 44
DpnII GATC 2 cut(s) 38, 42
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 231
FaeI CATG 2 cut(s) 165, 233
FaiI YATR 5 cut(s) 33, 35, 163, 227, 231
FatI CATG 2 cut(s) 161, 229
FauNDI CATATG 1 cut(s) 33
Hin1II CATG 2 cut(s) 165, 233
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 12, 83
Hpy188III TCNNGA 1 cut(s) 168
Hpy8I GTNNAC 2 cut(s) 12, 83
HpyCH4III ACNGT 2 cut(s) 58, 198
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 12, 229
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 2 cut(s) 165, 233
Kzo9I GATC 2 cut(s) 38, 42
LpnPI CCDG 1 cut(s) 153
LweI GCATC 1 cut(s) 168
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 40, 44
MboI GATC 2 cut(s) 38, 42
MboII GAAGA 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 2 cut(s) 109, 142
MnlI CCTC 3 cut(s) 25, 127, 252
Mph1103I ATGCAT 1 cut(s) 231
MseI TTAA 2 cut(s) 255, 268
NdeI CATATG 1 cut(s) 33
NdeII GATC 2 cut(s) 38, 42
NlaIII CATG 2 cut(s) 165, 233
NsiI ATGCAT 1 cut(s) 231
NspI RCATGY 1 cut(s) 165
SaqAI TTAA 2 cut(s) 255, 268
Sau3AI GATC 2 cut(s) 38, 42
SduI GDGCHC 1 cut(s) 14
SetI ASST 3 cut(s) 17, 82, 263
SfaNI GCATC 1 cut(s) 168
SgeI CNNG 9 cut(s) 21, 40, 90, 106, 174, 180, 229, 242, 251
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 2 cut(s) 109, 142
SsiI CCGC 1 cut(s) 264
TaaI ACNGT 2 cut(s) 58, 198
TaiI ACGT 1 cut(s) 82
TaqI TCGA 2 cut(s) 41, 51
TasI AATT 2 cut(s) 109, 142
Tru1I TTAA 2 cut(s) 255, 268
Tru9I TTAA 2 cut(s) 255, 268
TspDTI ATGAA 3 cut(s) 17, 165, 246
VneI GTGCAC 1 cut(s) 10
XapI RAATTY 1 cut(s) 109
XceI RCATGY 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.