RchiOBHm_Chr1g0375311

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
62766315 .. 62767904
1590 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGGATTTTCATCCCACTCTGCCTGTAGCTCCTACAGCAATAAGTTTAGCTGTACTTATTCTTTTAGCAGTATTTTTTTTGCCAGAGAAGAACAAGAGATACCCTCCTGTTGCAGGAACTGTCTTACACCAACTGATCAACTTCAACAGGTACTCTAGACAACCCCGGAAGAAAAGATTGCCCAGGAAGTTAGAGCTCAAGCAAGTTGCAGCTAACCTTACTGAAGAAGCCCTTAACAAAATGCATTATCTCCATGCAGTTTTGACTGAGACACTAAGACTCTATCCTGCAGTTCCAATGATTGTCATACGTGAATTGAATGCTGGTCCAAGAATTTGTCTCGGAAAAGACTACGGTTATATCCAGATGAGAATATTTTCTGCTATACTTTTAAGTAACTACATAGAGAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

138

Amino Acids

15.91

Weight (kDa)

10.05

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 70 - 106 6.3e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 2 cut(s) 54, 152
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 2 cut(s) 145, 319
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 4 cut(s) 29, 50, 196, 212
AluI AGCT 4 cut(s) 29, 50, 196, 212
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 263, 344
AlwNI CAGNNNCTG 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 333
Asp700I GAANNNNTTC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 166
AvaII GGWCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 184
BclI TGATCA 1 cut(s) 135
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 263, 344
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 3 cut(s) 24, 33, 288
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 166, 184
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmrFI CCNGG 2 cut(s) 166, 184
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 166
BsaAI YACGTR 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 164, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 164, 182
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 263, 344
BsmI GAATGC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 164, 182
BssMI GATC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 121, 356
BstBAI YACGTR 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 267, 275
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 2 cut(s) 263, 344
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 164, 182
BstSFI CTRYAG 3 cut(s) 24, 33, 288
BstV1I GCAGC 1 cut(s) 221
BtsCI GGATG 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 53, 151
CviAII CATG 1 cut(s) 254
CviJI RGCY 5 cut(s) 29, 50, 196, 212, 230
CviKI_1 RGCY 5 cut(s) 29, 50, 196, 212, 230
CviQI GTAC 2 cut(s) 53, 151
DdeI CTNAG 2 cut(s) 267, 275
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 326
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 196
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 1 cut(s) 257
FaiI YATR 5 cut(s) 255, 308, 360, 386, 404
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 210
HapII CCGG 1 cut(s) 166
Hin1II CATG 1 cut(s) 257
HinfI GANTC 1 cut(s) 279
HpaII CCGG 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 2 cut(s) 156, 364
HpyCH4III ACNGT 2 cut(s) 121, 356
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 5 cut(s) 113, 209, 244, 257, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 267, 275
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 1 cut(s) 221
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 395
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 3 cut(s) 100, 181, 236
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 2 cut(s) 314, 333
MlyI GAGTC 1 cut(s) 273
MnlI CCTC 2 cut(s) 114, 402
Mph1103I ATGCAT 1 cut(s) 246
MroXI GAANNNNTTC 1 cut(s) 376
MseI TTAA 3 cut(s) 234, 392, 415
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 2 cut(s) 166, 184
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 166
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 246
PctI GAATGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 376
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspPI GGNCC 1 cut(s) 326
PsrI GAACNNNNNNTAC 2 cut(s) 83, 115
PstI CTGCAG 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 119
RsaI GTAC 2 cut(s) 54, 152
RsaNI GTAC 2 cut(s) 53, 151
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 3 cut(s) 234, 392, 415
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 2 cut(s) 166, 184
SduI GDGCHC 1 cut(s) 198
SetI ASST 8 cut(s) 31, 52, 152, 198, 214, 219, 313, 413
SfcI CTRYAG 3 cut(s) 24, 33, 288
SinI GGWCC 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 314, 333
SspI AATATT 1 cut(s) 375
SspMI CTAG 1 cut(s) 156
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 164, 182
TaaI ACNGT 2 cut(s) 121, 356
TaiI ACGT 1 cut(s) 313
TasI AATT 2 cut(s) 314, 333
TatI WGTACW 1 cut(s) 52
Tru1I TTAA 3 cut(s) 234, 392, 415
Tru9I TTAA 3 cut(s) 234, 392, 415
TseI GCWGC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 326
XagI CCTNNNNNAGG 1 cut(s) 111
XapI RAATTY 1 cut(s) 333
XbaI TCTAGA 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 376
XspI CTAG 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.