Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

63087318 .. 63087551

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGGGATTGGCCAGAGAATCAAAAGGCATGCAATTTATGTGGATGGTAAGCGGGTTGCAAATGGAACCACTGTGGGGTACAAGAGGCTTCACAGATTTGAAAGGGGAGTAGTCTATGGCCAAATTGTCAGAATTAGAATTGAAGACTCAAAAGGGCTGCCTTTGATTTCTTCCGTTGGTCTGCATTTTGATCCCTATTGGCACCCAAGTGAGGGTAGCTACTTTGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

77

Amino Acids

8.83

Weight (kDa)

9.89

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	201
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	2 cut(s)	10, 118
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	75, 211, 212
AgsI	TTSAA	2 cut(s)	101, 143
AleI	CACNNNNGTG	1 cut(s)	207
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	10, 118
ApeKI	GCWGC	1 cut(s)	157
BalI	TGGCCA	2 cut(s)	12, 120
BanI	GGYRCC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	67, 203
BpiI	GAAGAC	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 211, 212
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	3 cut(s)	75, 211, 212
BseXI	GCAGC	1 cut(s)	144
BshFI	GGCC	2 cut(s)	12, 120
BshNI	GGYRCC	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	75, 211, 212
BsnI	GGCC	2 cut(s)	12, 120
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	12, 120
BspLI	GGNNCC	2 cut(s)	67, 203
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	201
BssMI	GATC	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	12, 120
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	5 cut(s)	12, 88, 120, 157, 219
CviKI_1	RGCY	5 cut(s)	12, 88, 120, 157, 219
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	2 cut(s)	10, 118
FaeI	CATG	1 cut(s)	32
FaiI	YATR	4 cut(s)	30, 39, 117, 230
FatI	CATG	1 cut(s)	28
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	12, 120
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	2 cut(s)	18, 146
Hpy188I	TCNGA	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	32, 59, 184
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	144
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	155, 162
MlsI	TGGCCA	2 cut(s)	12, 120
MluCI	AATT	4 cut(s)	33, 123, 132, 138
MluNI	TGGCCA	2 cut(s)	12, 120
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	2 cut(s)	78, 205
Mox20I	TGGCCA	2 cut(s)	12, 120
MscI	TGGCCA	2 cut(s)	12, 120
MslI	CAYNNNNRTG	1 cut(s)	207
Msp20I	TGGCCA	2 cut(s)	12, 120
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	2 cut(s)	67, 203
NspI	RCATGY	1 cut(s)	32
OliI	CACNNNNGTG	1 cut(s)	207
PaeI	GCATGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	67, 203
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	207
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	140
SetI	ASST	1 cut(s)	221
SgeI	CNNG	5 cut(s)	25, 41, 65, 94, 219
SmiMI	CAYNNNNRTG	1 cut(s)	207
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	4 cut(s)	33, 123, 132, 138
SsiI	CCGC	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	73
TasI	AATT	4 cut(s)	33, 123, 132, 138
TfiI	GAWTC	1 cut(s)	18
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	76
XceI	RCATGY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.