Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

63966617 .. 63968273

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCATGTAATTTGGATTTGGACTTTATTCGGTTTTGGTTTTGGTTTTGGTTTAGAATTGGAATCGATCGTGCACGGTTGTCTTGTCACACCGACTCTGTCCATTGGATCTATACTCCTCCAACAAGCTGCAGTTTCAGCTTCTTTTCACTATAACAATGTAGAAATTGTAGAATCAAGAGCTCAGGCAACGGTATACATCCTGAAACATGATATCACAGATGTGCAAAGTCTCATGCCAGGCCTCCTTATCTTAGCTATCAGAAAGATTATTCGCATCAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015979 GO:0019684 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

95

Amino Acids

10.56

Weight (kDa)

6.89

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	238
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	4 cut(s)	128, 140, 182, 257
AluI	AGCT	4 cut(s)	128, 140, 182, 257
Alw21I	GWGCWC	2 cut(s)	75, 184
Alw26I	GTCTC	1 cut(s)	236
Alw44I	GTGCAC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	241
ApaLI	GTGCAC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	2 cut(s)	75, 184
BbvI	GCAGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	65
BseGI	GGATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	75, 184
BsmAI	GTCTC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	75, 184
Bsp143I	GATC	2 cut(s)	66, 107
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	196
BspDI	ATCGAT	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	115
BssMI	GATC	2 cut(s)	66, 107
BssNAI	GTATAC	1 cut(s)	196
Bst1107I	GTATAC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	77, 193
BstDEI	CTNAG	2 cut(s)	183, 253
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	69, 110
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	2 cut(s)	66, 107
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BstZ17I	GTATAC	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	65
CviAII	CATG	3 cut(s)	5, 209, 235
CviJI	RGCY	5 cut(s)	128, 140, 182, 243, 257
CviKI_1	RGCY	5 cut(s)	128, 140, 182, 243, 257
DdeI	CTNAG	2 cut(s)	183, 253
DpnI	GATC	2 cut(s)	68, 109
DpnII	GATC	2 cut(s)	66, 107
Ecl136II	GAGCTC	1 cut(s)	182
Eco147I	AGGCCT	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	214
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	3 cut(s)	8, 212, 238
FaiI	YATR	7 cut(s)	6, 113, 153, 196, 210, 236, 286
FatI	CATG	3 cut(s)	4, 208, 234
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	8, 212, 238
HinfI	GANTC	3 cut(s)	62, 94, 173
Hpy166II	GTNNAC	2 cut(s)	73, 196
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	2 cut(s)	177, 202
Hpy8I	GTNNAC	2 cut(s)	73, 196
HpyCH4III	ACNGT	2 cut(s)	77, 193
HpyCH4V	TGCA	4 cut(s)	4, 73, 131, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	183, 253
Hsp92II	CATG	3 cut(s)	8, 212, 238
Kzo9I	GATC	2 cut(s)	66, 107
LpnPI	CCDG	4 cut(s)	170, 215, 225, 252
Lsp1109I	GCAGC	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	68, 109
MboI	GATC	2 cut(s)	66, 107
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	2 cut(s)	75, 184
MluCI	AATT	3 cut(s)	9, 56, 165
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	128, 254
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	2 cut(s)	66, 107
NlaIII	CATG	3 cut(s)	8, 212, 238
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	221
PceI	AGGCCT	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	62, 173
PflFI	GACNNNGTC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	130
Ple19I	CGATCG	1 cut(s)	69
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	97
PvuI	CGATCG	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	184
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	66, 107
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	2 cut(s)	75, 184
SetI	ASST	5 cut(s)	130, 142, 184, 259, 285
SfcI	CTRYAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	9, 56, 165
SseBI	AGGCCT	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	184
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	77, 193
TaqI	TCGA	1 cut(s)	65
TasI	AATT	3 cut(s)	9, 56, 165
TfiI	GAWTC	2 cut(s)	62, 173
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	85
Tth111I	GACNNNGTC	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	71
XceI	RCATGY	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.