Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

64924661 .. 64925472

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGGTGGCACCAATGGGGACCGTCCACATCCTCCACCTCGCCTTGAGGGAGGTTCGAGGTTTGGGAATTGTAATAGGTACCGGGGATCCTCAGGTCAGTTTGGTTGTGACAAGGCAGGAGCACCTAGCCTGTACACTTCCAGCCCTATTTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

52

Amino Acids

5.43

Weight (kDa)

8.84

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	78
AccB1I	GGYRCC	2 cut(s)	8, 78
AclWI	GGATC	2 cut(s)	81, 94
AfaI	GTAC	2 cut(s)	80, 134
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	2 cut(s)	81, 94
Asp718I	GGTACC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	19
AxyI	CCTNAGG	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	86
BanI	GGYRCC	2 cut(s)	8, 78
Bbv12I	GWGCWC	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	83
BfaI	CTAG	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	4 cut(s)	10, 20, 80, 88
BmrFI	CCNGG	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	82
Bse21I	CCTNAGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	105
BshNI	GGYRCC	2 cut(s)	8, 78
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	104
BspLI	GGNNCC	4 cut(s)	10, 20, 80, 88
BspPI	GGATC	2 cut(s)	81, 94
BspT107I	GGYRCC	2 cut(s)	8, 78
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	79, 133
CviJI	RGCY	2 cut(s)	129, 144
CviKI_1	RGCY	2 cut(s)	129, 144
CviQI	GTAC	2 cut(s)	79, 133
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	19
Eco81I	CCTNAGG	1 cut(s)	91
FaqI	GGGAC	1 cut(s)	32
FokI	GGATG	1 cut(s)	15
FspBI	CTAG	1 cut(s)	126
HapII	CCGG	1 cut(s)	82
HpaII	CCGG	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	26, 135
Hpy188I	TCNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	26, 135
HpyCH4III	ACNGT	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	91
KpnI	GGTACC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	5 cut(s)	78, 95, 102, 143, 154
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	1 cut(s)	67
MnlI	CCTC	6 cut(s)	40, 42, 44, 48, 51, 100
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	86
NlaIV	GGNNCC	4 cut(s)	10, 20, 80, 88
NmuCI	GTSAC	1 cut(s)	107
PspN4I	GGNNCC	4 cut(s)	10, 20, 80, 88
PspPI	GGNCC	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	80, 134
RsaNI	GTAC	2 cut(s)	79, 133
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	6 cut(s)	40, 55, 62, 80, 97, 127
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	67
TatI	WGTACW	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	19
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.