RchiOBHm_Chr1g0378791

Protein SGT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029526
Physical Location & Seq
Forward (+)
65124413 .. 65126811
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGTTCCTGGAGAAGAGACATATCATTTTCAGCCTCGCCTGTTTGGAAAGATTTGATGTTTTGTCTACCAAAGTTGACATTCGCCTGGCCAAAGCTGAACCTATACATTCAAGAGATGTCCAGTTCAGCAAGGATAACCCTGTTCCACTAAAGGTTAATGCCCCAGTTATTGGCGTCCAAAGGCCATCTTACCCATCCTCCAAACCAAAATGGGTAGATTGGGACAAGCTTGAAGCCCAAGAAAAAGATGAGAAGCTTGATGGTGATGCAGCTTTGAACAAATTTTTCCAAGACATATTCAAGGATGCTGATGAGGACACAAGAAGGGCCATGAGAAAATCTTTTTGTACCAGGTGGAGTTGA

Protein Analysis

120

Amino Acids

14.0

Weight (kDa)

8.56

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGS PF05002 73 - 116 1.7e-13 SGS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029526)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378791 RchiOBHm_Chr1g0379301

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 170
AccI GTMKAC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 4 cut(s) 111, 233, 277, 301
AjnI CCWGG 3 cut(s) 6, 84, 350
AluBI AGCT 4 cut(s) 95, 229, 256, 272
AluI AGCT 4 cut(s) 95, 229, 256, 272
Alw26I GTCTC 1 cut(s) 10
AoxI GGCC 3 cut(s) 87, 182, 327
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 275
BalI TGGCCA 1 cut(s) 89
BbvI GCAGC 1 cut(s) 281
BccI CCATC 3 cut(s) 193, 202, 254
BciT130I CCWGG 3 cut(s) 8, 86, 352
BcoDI GTCTC 1 cut(s) 10
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 3 cut(s) 8, 86, 352
BmgT120I GGNCC 1 cut(s) 327
BmrFI CCNGG 3 cut(s) 8, 86, 352
BmrI ACTGGG 1 cut(s) 158
BmsI GCATC 2 cut(s) 256, 295
BmuI ACTGGG 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 121, 164
BseBI CCWGG 3 cut(s) 8, 86, 352
BseGI GGATG 2 cut(s) 194, 310
BseLI CCNNNNNNNGG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 121, 164
BseXI GCAGC 1 cut(s) 281
BshFI GGCC 3 cut(s) 89, 184, 329
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 3 cut(s) 89, 184, 329
BspANI GGCC 3 cut(s) 89, 184, 329
BsrI ACTGG 2 cut(s) 121, 164
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 3 cut(s) 8, 86, 352
Bst6I CTCTTC 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 174
BstF5I GGATG 2 cut(s) 194, 310
BstMAI GTCTC 1 cut(s) 10
BstNI CCWGG 3 cut(s) 8, 86, 352
BstSCI CCNGG 3 cut(s) 6, 84, 350
BstV1I GCAGC 1 cut(s) 281
BsuRI GGCC 3 cut(s) 89, 184, 329
BtsCI GGATG 2 cut(s) 194, 310
Cfr13I GGNCC 1 cut(s) 327
CseI GACGC 1 cut(s) 163
CsiI ACCWGGT 1 cut(s) 350
Csp6I GTAC 1 cut(s) 348
CviAII CATG 1 cut(s) 331
CviJI RGCY 9 cut(s) 33, 89, 95, 184, 229, 236, 256, 272, 329
CviKI_1 RGCY 9 cut(s) 33, 89, 95, 184, 229, 236, 256, 272, 329
CviQI GTAC 1 cut(s) 348
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EcoRII CCWGG 3 cut(s) 6, 84, 350
FaeI CATG 1 cut(s) 334
FaiI YATR 4 cut(s) 21, 104, 296, 332
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 330
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 181, 317
Fsp4HI GCNGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 3 cut(s) 89, 184, 329
HgaI GACGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 1 cut(s) 334
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 2 cut(s) 227, 254
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 2 cut(s) 66, 76
Hpy188III TCNNGA 1 cut(s) 111
Hpy8I GTNNAC 2 cut(s) 66, 76
HpyAV CCTTC 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 269
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 1 cut(s) 334
LpnPI CCDG 8 cut(s) 20, 52, 71, 98, 134, 153, 177, 337
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 2 cut(s) 256, 295
MabI ACCWGGT 1 cut(s) 350
MboII GAAGA 1 cut(s) 25
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 3 cut(s) 44, 208, 307
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 3 cut(s) 8, 86, 352
MvaI CCWGG 3 cut(s) 8, 86, 352
NlaIII CATG 1 cut(s) 334
PflMI CCANNNNNTGG 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 6
PkrI GCNGC 1 cut(s) 271
Psp6I CCWGG 3 cut(s) 6, 84, 350
PspGI CCWGG 3 cut(s) 6, 84, 350
PspPI GGNCC 1 cut(s) 327
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 327
ScrFI CCNGG 3 cut(s) 8, 86, 352
SetI ASST 7 cut(s) 97, 103, 156, 231, 258, 274, 356
SexAI ACCWGGT 1 cut(s) 350
SfaNI GCATC 2 cut(s) 256, 295
Sse9I AATT 1 cut(s) 281
StyD4I CCNGG 3 cut(s) 6, 84, 350
TasI AATT 1 cut(s) 281
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 170
XapI RAATTY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.