Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

65251613 .. 65254075

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTATTAACAAGTGCTGCATATGTTCATCTGAAACACTACTTATCCAAACACATCCGGAACCTTTCACCTGCGAGCAGAGCTATTTGGCTATCAGGACCTGCAGAACTTCATCATCAAATGGTCGCCAAGGCTTTAGCTCATTTCTTTGAATTGAAGTTGCTGTTGTTGGATGTTAACCGAGTATTTGCAGCTTTACTCTTCAATAAACTTTGGCTCATCACAGTTACTTGTATGCCATTTTTCGCATTTTACCGATGCAGAGTTAATATGGGTGTACTAAAAATGATTCAGCAAGCATTCTCTGCTGTTCATGTATCTCTGTTACATTGTAATGTAATCCTGTGGAACGGGAGATTGTGGTATTTGGAGATGATTTGGGATTTTAGCAAAATAGGTAGGCGAACTTGCATTCGATATGCAGTGTTCGGAGATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

146

Amino Acids

16.97

Weight (kDa)

9.91

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	2 cut(s)	79, 109
AccIII	TCCGGA	1 cut(s)	57
AfaI	GTAC	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	152, 157, 205
AluBI	AGCT	3 cut(s)	83, 140, 194
AluI	AGCT	3 cut(s)	83, 140, 194
AlwNI	CAGNNNCTG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	17, 191
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	4, 203
BccI	CCATC	1 cut(s)	428
BfaI	CTAG	1 cut(s)	439
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	2 cut(s)	79, 109
BisI	GCNGC	2 cut(s)	18, 192
BlsI	GCNGC	2 cut(s)	19, 193
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	62
BmsI	GCATC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	57
BseAI	TCCGGA	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	54, 178
BseXI	GCAGC	2 cut(s)	4, 203
BsiSI	CCGG	1 cut(s)	58
BsmI	GAATGC	2 cut(s)	299, 411
Bsp13I	TCCGGA	1 cut(s)	57
BspEI	TCCGGA	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	62
BspMAI	CTGCAG	1 cut(s)	106
BspMI	ACCTGC	2 cut(s)	79, 109
BssECI	CCNNGG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	76, 297
BstF5I	GGATG	2 cut(s)	54, 178
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 305
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	4, 203
BtsCI	GGATG	2 cut(s)	54, 178
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	429
BveI	ACCTGC	2 cut(s)	79, 109
Cac8I	GCNNGC	2 cut(s)	76, 297
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	7 cut(s)	83, 91, 134, 140, 194, 217, 438
CviKI_1	RGCY	7 cut(s)	83, 91, 134, 140, 194, 217, 438
CviQI	GTAC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	317
FaiI	YATR	6 cut(s)	22, 24, 236, 272, 315, 420
FatI	CATG	1 cut(s)	313
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	18, 192
FokI	GGATG	2 cut(s)	41, 185
Fsp4HI	GCNGC	2 cut(s)	18, 192
FspBI	CTAG	1 cut(s)	439
GluI	GCNGC	2 cut(s)	18, 192
HapII	CCGG	1 cut(s)	58
Hin1II	CATG	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	289
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	2 cut(s)	178, 278
Hpy188I	TCNGA	2 cut(s)	33, 431
Hpy188III	TCNNGA	2 cut(s)	58, 96
Hpy8I	GTNNAC	2 cut(s)	178, 278
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	6 cut(s)	20, 104, 191, 261, 411, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 305
Hsp92II	CATG	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	57
KspAI	GTTAAC	1 cut(s)	178
LpnPI	CCDG	5 cut(s)	71, 81, 84, 114, 356
Lsp1109I	GCAGC	2 cut(s)	4, 203
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	226, 324
MboII	GAAGA	1 cut(s)	193
MluCI	AATT	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	150
MroI	TCCGGA	1 cut(s)	57
MseI	TTAA	3 cut(s)	8, 177, 267
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	58
Mva1269I	GAATGC	2 cut(s)	299, 411
MwoI	GCNNNNNNNGC	2 cut(s)	80, 305
NdeI	CATATG	1 cut(s)	22
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	62
PaqCI	CACCTGC	1 cut(s)	79
PctI	GAATGC	2 cut(s)	299, 411
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	19, 193
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	98
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	8, 177, 267
SatI	GCNGC	2 cut(s)	18, 192
Sau96I	GGNCC	1 cut(s)	98
SetI	ASST	7 cut(s)	66, 73, 85, 103, 142, 196, 400
SfaNI	GCATC	1 cut(s)	248
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	439
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	415
TasI	AATT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	3 cut(s)	8, 177, 267
Tru9I	TTAA	3 cut(s)	8, 177, 267
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	2 cut(s)	17, 191
TspDTI	ATGAA	3 cut(s)	17, 101, 302
TspRI	CASTG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	98
XspI	CTAG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.