Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

65539881 .. 65543291

Gene Structure 3411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGCAGAAGCACATTCTGTTGTCTGCTTTGAGTGTCGGGGTTGGAGTTGGAGTGGGTTTGGGGTTGAGTTCCGGCCACGCAGTGAGTAAATGGGTGAACGGAAACTGCTCGTCCGATGAGGTGACGGCGGAGCAAATTGAGCAGGAGCTGATGAGGCAGGTTGTGGATATGAGAGACAGTAAGGTTACATTTGAGGAGTTTCCTTATTATCTAAGGGAAAGAACTCGGATGTTATTAACAAGTGCTGCATATGTACATCTGAAACACTCTGACTTATCTAAACACACCCGGAACCTTTCACCTGCAAGCAGAGCTATTTTGCTATCAGGACCTGCAGAACTTTATCATCAAATGCTCGCCAAGGCTTTAGCCCATTTCTTTGAATCGAAGTTGCTGTTGTTGGATGTTACGGACTTTTCAATGAAGATGCAGAGTAAATATGGGTGTACCAAAAAAGAATCATTTAAGAGGCCCATCTCAGAGGTAACATTGGAGCGGATGTCTGGATTGTTTGGATCCTTCTCAATCCTCCCTTCAAGTGGAGAGACTAAAGGCACCTTATTACGGCCAAGCAGTGCTGCAGATCTCATATCAAGGAGTTCTGAAGGATCAACTAACCGTAGGACACTTAAAAGAAATGCCTCTTCTGTATCTGATATCAGTAGCATCAGTTCCAAAAGTGCTTCCACAAATTCAGCTCCTCTCAAGCGAATGAGTAGCTGGTGTTTTGACGAGAGACTTTTTCTACAATCACTTTACAAGGTCTTATCTTCCCTATCAGAAAGTGGCTCGATCATTTTATACCTCAGGGATGTGGAGAAGCTTTTTCTCCAATCAGGACGGTTATACAATTTGTTCAGTAAAATGTTGAAGAAACTATCAGGATCCGTGTTAATACTTGGTTCCCGAATGTTAGATGCTGAAGATGATTGCAAAGAAGTAGATGAGAGGCTTGCTGCTTTGTTCACATACAATATTGAGATCACCCCCCTGACGATGAGACTCATCTTGTCAGCTGGAAAGCCCAACTGGAAGAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA

Protein Analysis

348

Amino Acids

38.75

Weight (kDa)

9.36

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	313
Acc36I	ACCTGC	3 cut(s)	151, 313, 343
AccB1I	GGYRCC	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	499
AciI	CCGC	2 cut(s)	131, 499
AclWI	GGATC	5 cut(s)	513, 526, 619, 882, 895
AcoI	YGGCCR	2 cut(s)	76, 569
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	2 cut(s)	627, 945
AdeI	CACNNNGTG	1 cut(s)	85
AfaI	GTAC	2 cut(s)	258, 451
AfiI	CCNNNNNNNGG	2 cut(s)	542, 567
AgsI	TTSAA	4 cut(s)	386, 423, 540, 874
AluBI	AGCT	6 cut(s)	151, 317, 701, 723, 826, 1019
AluI	AGCT	6 cut(s)	151, 317, 701, 723, 826, 1019
Alw26I	GTCTC	4 cut(s)	171, 542, 733, 997
AlwI	GGATC	5 cut(s)	513, 526, 619, 882, 895
AlwNI	CAGNNNCTG	2 cut(s)	151, 335
AoxI	GGCC	3 cut(s)	76, 473, 569
ApeKI	GCWGC	3 cut(s)	248, 581, 959
ApoI	RAATTY	1 cut(s)	694
AspS9I	GGNCC	2 cut(s)	332, 474
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	4 cut(s)	109, 136, 294, 979
AvaII	GGWCC	1 cut(s)	332
AxyI	CCTNAGG	1 cut(s)	809
BamHI	GGATCC	2 cut(s)	518, 887
BanI	GGYRCC	1 cut(s)	557
BbvI	GCAGC	3 cut(s)	235, 568, 946
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	2 cut(s)	144, 584
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	4 cut(s)	171, 542, 733, 997
BfmI	CTRYAG	2 cut(s)	336, 582
BfuAI	ACCTGC	3 cut(s)	151, 313, 343
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	3 cut(s)	249, 582, 960
BlsI	GCNGC	3 cut(s)	250, 583, 961
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	332, 474
BmiI	GGNNCC	5 cut(s)	296, 520, 559, 889, 907
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	3 cut(s)	420, 678, 910
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	363
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 69, 488, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 567
Bse1I	ACTGG	1 cut(s)	1037
Bse21I	CCTNAGG	1 cut(s)	809
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	4 cut(s)	237, 412, 507, 820
BseLI	CCNNNNNNNGG	2 cut(s)	542, 567
BseMII	CTCAG	2 cut(s)	495, 823
BseNI	ACTGG	1 cut(s)	1037
BseRI	GAGGAG	2 cut(s)	212, 693
BseXI	GCAGC	3 cut(s)	235, 568, 946
BshFI	GGCC	3 cut(s)	78, 475, 571
BshNI	GGYRCC	1 cut(s)	557
BsiSI	CCGG	2 cut(s)	75, 292
BslI	CCNNNNNNNGG	2 cut(s)	542, 567
BsmAI	GTCTC	4 cut(s)	171, 542, 733, 997
BsnI	GGCC	3 cut(s)	78, 475, 571
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	6 cut(s)	518, 586, 611, 795, 887, 984
BspACI	CCGC	2 cut(s)	131, 499
BspANI	GGCC	3 cut(s)	78, 475, 571
BspCNI	CTCAG	2 cut(s)	494, 822
BspLI	GGNNCC	5 cut(s)	296, 520, 559, 889, 907
BspMAI	CTGCAG	2 cut(s)	340, 586
BspMI	ACCTGC	3 cut(s)	151, 313, 343
BspPI	GGATC	5 cut(s)	513, 526, 619, 882, 895
BspT107I	GGYRCC	1 cut(s)	557
BsrBI	CCGCTC	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	1037
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	6 cut(s)	518, 586, 611, 795, 887, 984
BssT1I	CCWWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	182, 623, 846
Bst6I	CTCTTC	2 cut(s)	652, 1031
BstAUI	TGTACA	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	310, 360, 957
BstDEI	CTNAG	3 cut(s)	215, 481, 809
BstF5I	GGATG	4 cut(s)	237, 412, 507, 820
BstKTI	GATC	6 cut(s)	521, 589, 614, 798, 890, 987
BstMAI	GTCTC	4 cut(s)	171, 542, 733, 997
BstMBI	GATC	6 cut(s)	518, 586, 611, 795, 887, 984
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 157, 314
BstSCI	CCNGG	1 cut(s)	290
BstSFI	CTRYAG	2 cut(s)	336, 582
BstV1I	GCAGC	3 cut(s)	235, 568, 946
BstX2I	RGATCY	3 cut(s)	518, 586, 887
BstYI	RGATCY	3 cut(s)	518, 586, 887
Bsu36I	CCTNAGG	1 cut(s)	809
BsuRI	GGCC	3 cut(s)	78, 475, 571
BtsCI	GGATG	4 cut(s)	237, 412, 507, 820
BtsI	GCAGTG	2 cut(s)	90, 583
BtsIMutI	CAGTG	2 cut(s)	90, 583
BveI	ACCTGC	3 cut(s)	151, 313, 343
Cac8I	GCNNGC	3 cut(s)	310, 360, 957
CaiI	CAGNNNCTG	2 cut(s)	151, 335
Cfr13I	GGNCC	2 cut(s)	332, 474
Csp6I	GTAC	2 cut(s)	257, 450
CviAII	CATG	1 cut(s)	1044
CviQI	GTAC	2 cut(s)	257, 450
DdeI	CTNAG	3 cut(s)	215, 481, 809
DpnI	GATC	6 cut(s)	520, 588, 613, 797, 889, 986
DpnII	GATC	6 cut(s)	518, 586, 611, 795, 887, 984
DraIII	CACNNNGTG	1 cut(s)	85
EaeI	YGGCCR	2 cut(s)	76, 569
Eam1104I	CTCTTC	2 cut(s)	652, 1031
EarI	CTCTTC	2 cut(s)	652, 1031
EciI	GGCGGA	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	627, 945
Eco81I	CCTNAGG	1 cut(s)	809
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRV	GATATC	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	1047
FaiI	YATR	9 cut(s)	173, 253, 255, 444, 593, 805, 850, 973, 1045
FatI	CATG	1 cut(s)	1043
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	3 cut(s)	249, 582, 960
FokI	GGATG	4 cut(s)	244, 419, 514, 827
Fsp4HI	GCNGC	3 cut(s)	249, 582, 960
GluI	GCNGC	3 cut(s)	249, 582, 960
HaeIII	GGCC	3 cut(s)	78, 475, 571
HapII	CCGG	2 cut(s)	75, 292
Hin1II	CATG	1 cut(s)	1047
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	3 cut(s)	386, 461, 1005
HpaII	CCGG	2 cut(s)	75, 292
HphI	GGTGA	4 cut(s)	109, 136, 294, 979
Hpy166II	GTNNAC	3 cut(s)	100, 450, 969
Hpy188I	TCNGA	8 cut(s)	118, 231, 264, 274, 484, 607, 658, 784
Hpy188III	TCNNGA	5 cut(s)	330, 507, 840, 885, 909
Hpy8I	GTNNAC	3 cut(s)	100, 450, 969
HpyAV	CCTTC	3 cut(s)	532, 546, 602
HpyCH4III	ACNGT	3 cut(s)	182, 623, 846
HpyCH4V	TGCA	6 cut(s)	251, 308, 338, 433, 584, 936
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 157, 314
HpyF3I	CTNAG	3 cut(s)	215, 481, 809
Hsp92II	CATG	1 cut(s)	1047
Kzo9I	GATC	6 cut(s)	518, 586, 611, 795, 887, 984
LmnI	GCTCC	5 cut(s)	4, 133, 148, 496, 706
Lsp1109I	GCAGC	3 cut(s)	235, 568, 946
LweI	GCATC	3 cut(s)	420, 678, 910
MaeIII	GTNAC	4 cut(s)	124, 187, 409, 487
MalI	GATC	6 cut(s)	520, 588, 613, 797, 889, 986
MbiI	CCGCTC	1 cut(s)	499
MboI	GATC	6 cut(s)	518, 586, 611, 795, 887, 984
MboII	GAAGA	5 cut(s)	439, 639, 765, 886, 938
MflI	RGATCY	3 cut(s)	518, 586, 887
MluCI	AATT	3 cut(s)	138, 694, 853
MlyI	GAGTC	1 cut(s)	999
MmeI	TCCRAC	3 cut(s)	25, 31, 384
MseI	TTAA	4 cut(s)	239, 468, 633, 896
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	2 cut(s)	75, 292
MspR9I	CCNGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	142, 157, 314
NciI	CCSGG	1 cut(s)	292
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	6 cut(s)	518, 586, 611, 795, 887, 984
NlaIII	CATG	1 cut(s)	1047
NlaIV	GGNNCC	5 cut(s)	296, 520, 559, 889, 907
NmuCI	GTSAC	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	386, 461
PkrI	GCNGC	3 cut(s)	250, 583, 961
PleI	GAGTC	1 cut(s)	999
PpsI	GAGTC	1 cut(s)	999
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
PspN4I	GGNNCC	5 cut(s)	296, 520, 559, 889, 907
PspPI	GGNCC	2 cut(s)	332, 474
PspPPI	RGGWCCY	1 cut(s)	332
PsrI	GAACNNNNNNTAC	2 cut(s)	658, 690
PstI	CTGCAG	2 cut(s)	340, 586
PstNI	CAGNNNCTG	2 cut(s)	151, 335
PsuI	RGATCY	3 cut(s)	518, 586, 887
PvuII	CAGCTG	1 cut(s)	1019
RsaI	GTAC	2 cut(s)	258, 451
RsaNI	GTAC	2 cut(s)	257, 450
SaqAI	TTAA	4 cut(s)	239, 468, 633, 896
SatI	GCNGC	3 cut(s)	249, 582, 960
Sau3AI	GATC	6 cut(s)	518, 586, 611, 795, 887, 984
Sau96I	GGNCC	2 cut(s)	332, 474
SchI	GAGTC	1 cut(s)	999
ScrFI	CCNGG	1 cut(s)	292
SfaNI	GCATC	3 cut(s)	420, 678, 910
SfcI	CTRYAG	2 cut(s)	336, 582
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	3 cut(s)	138, 694, 853
SsiI	CCGC	2 cut(s)	131, 499
SspI	AATATT	1 cut(s)	979
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	182, 623, 846
TaqI	TCGA	2 cut(s)	389, 794
TasI	AATT	3 cut(s)	138, 694, 853
TatI	WGTACW	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	386, 461
Tru1I	TTAA	4 cut(s)	239, 468, 633, 896
Tru9I	TTAA	4 cut(s)	239, 468, 633, 896
TscAI	CASTG	2 cut(s)	90, 583
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	248, 581, 959
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	440
TspGWI	ACGGA	3 cut(s)	117, 428, 880
TspRI	CASTG	2 cut(s)	90, 583
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.