RchiOBHm_Chr1g0379741

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
65699964 .. 65700375
412 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGGCGGCCGATTCAAATTCCGGCGATCCAATCTCCGACTACGGCCGAACCCACCGGATCGTGCTCCTAATCGACCTAAACCCACTCCTCCATCTCCAAGACCCAACCCCATTTCTCACCTCTCTCCTCTCCTCCATCAAAACCCTAACCTCCTTCCCTCCTCTCTCTTCCTCTCTCTTCGCCTTCAGACCCTTCTTCTCGTCTCTCTCTCCTCTTCTCTCCTCCTCCAAGCTCCCCGCTTCCTCTCTCTCCCTCTCCTTCAACCCCCGGACTCTACTTTCCTCTCGCTCTCTCAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.83

Weight (kDa)

9.98

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 237
AclWI GGATC 2 cut(s) 20, 65
AcoI YGGCCR 2 cut(s) 6, 43
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 169
AgsI TTSAA 2 cut(s) 15, 262
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 2 cut(s) 20, 65
AoxI GGCC 2 cut(s) 6, 43
ApoI RAATTY 1 cut(s) 16
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 66
BccI CCATC 2 cut(s) 99, 143
BceAI ACGGC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 301
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 266
BseRI GAGGAG 7 cut(s) 77, 116, 121, 150, 201, 211, 214
BseX3I CGGCCG 2 cut(s) 6, 43
Bsh1285I CGRYCG 2 cut(s) 9, 46
BshFI GGCC 2 cut(s) 8, 45
BsiEI CGRYCG 2 cut(s) 9, 46
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 3 cut(s) 21, 55, 268
BsmAI GTCTC 1 cut(s) 207
BsmBI CGTCTC 1 cut(s) 207
BsnI GGCC 2 cut(s) 8, 45
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 25, 57
BspACI CCGC 2 cut(s) 5, 237
BspANI GGCC 2 cut(s) 8, 45
BspPI GGATC 2 cut(s) 20, 65
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 2 cut(s) 25, 57
Bst6I CTCTTC 3 cut(s) 172, 182, 219
BstKTI GATC 2 cut(s) 28, 60
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 2 cut(s) 25, 57
BstMCI CGRYCG 2 cut(s) 9, 46
BstSCI CCNGG 1 cut(s) 266
BstZI CGGCCG 2 cut(s) 6, 43
BsuRI GGCC 2 cut(s) 8, 45
CviJI RGCY 3 cut(s) 8, 45, 232
CviKI_1 RGCY 3 cut(s) 8, 45, 232
DpnI GATC 2 cut(s) 27, 59
DpnII GATC 2 cut(s) 25, 57
EaeI YGGCCR 2 cut(s) 6, 43
EagI CGGCCG 2 cut(s) 6, 43
Eam1104I CTCTTC 3 cut(s) 172, 182, 219
EarI CTCTTC 3 cut(s) 172, 182, 219
EclXI CGGCCG 2 cut(s) 6, 43
Eco52I CGGCCG 2 cut(s) 6, 43
Eco57I CTGAAG 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 207
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 301
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 8, 45
HapII CCGG 3 cut(s) 21, 55, 268
HinfI GANTC 2 cut(s) 11, 271
HpaII CCGG 3 cut(s) 21, 55, 268
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 37, 188
HpyAV CCTTC 4 cut(s) 163, 193, 202, 268
Kzo9I GATC 2 cut(s) 25, 57
LmnI GCTCC 2 cut(s) 69, 237
LpnPI CCDG 3 cut(s) 34, 68, 281
MaeI CTAG 1 cut(s) 301
MalI GATC 2 cut(s) 27, 59
MboI GATC 2 cut(s) 25, 57
MboII GAAGA 4 cut(s) 159, 169, 187, 206
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 16
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 60
MspI CCGG 3 cut(s) 21, 55, 268
MspR9I CCNGG 1 cut(s) 268
NciI CCSGG 1 cut(s) 268
NdeII GATC 2 cut(s) 25, 57
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 25, 57
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 1 cut(s) 66
SetI ASST 4 cut(s) 78, 122, 152, 234
Sse9I AATT 1 cut(s) 16
SsiI CCGC 2 cut(s) 5, 237
SspMI CTAG 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 266
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 16
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 11
XapI RAATTY 1 cut(s) 16
XspI CTAG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.